apis108 {ade4}R Documentation

Allelic frequencies in ten honeybees populations at eight microsatellites loci

Description

This data set gives the occurences for the allelic form on 8 loci in 10 populations of honeybees.

Usage

data(apis108)

Format

A data frame containing 180 rows (allelic forms on 8 loci) and 10 columns (populations of honeybees : El.Hermel, Al.Hoceima, Nimba, Celinda, Pretoria, Chalkidiki, Forli, Valenciennes, Umea and Seville).

Source

http://www.montpellier.inra.fr/URLB/apis/libanfreq.pdf

Franck P., Garnery L., Solignac M. and Cornuet J.M. (2000) Molecular confirmation of a fourth lineage in honeybees from the Near-East. Apidologie, 31, 167–180.

Examples

data(apis108)
apis <- count2genet(as.data.frame(t(apis108)))
apis.pca <- dudi.pca(apis$tab, center = apis$center,
    scale = FALSE, scannf = FALSE, nf = 3)

Worked out examples


> library(ade4)
> ### Name: apis108
> ### Title: Allelic frequencies in ten honeybees populations at eight
> ###   microsatellites loci
> ### Aliases: apis108
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(apis108)
> apis <- count2genet(as.data.frame(t(apis108)))
> apis.pca <- dudi.pca(apis$tab, center = apis$center,
+     scale = FALSE, scannf = FALSE, nf = 3)
> 
> 
> 
> 

[Package ade4 Index]