casitas {ade4}R Documentation

Enzymatic polymorphism in Mus musculus

Description

This data set is a data frame with 74 rows (mice) and 15 columns (loci enzymatic polymorphism of the DNA mitochondrial). Each value contains 6 characters coding for two allelles. The missing values are coding by '000000'.

Usage

data(casitas)

Format

The 74 individuals of casitas belong to 4 groups:

1
24 mice of the sub-species Mus musculus domesticus
2
11 mice of the sub-species Mus musculus castaneus
3
9 mice of the sub-species Mus musculus musculus
4
30 mice from a population of the lake Casitas (California)

Source

Exemple du logiciel GENETIX. Belkhir k. et al. GENETIX, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome, Populations, Interactions CNRS UMR 5000, Université de Montpellier II, Montpellier (France).
http://www.univ-montp2.fr/~genetix/genetix/genetix.htm

References

Orth, A., T. Adama, W. Din and F. Bonhomme. (1998) Hybridation naturelle entre deux sous espèces de souris domestique Mus musculus domesticus et Mus musculus castaneus près de Lake Casitas (Californie). Genome, 41, 104–110.

Examples

data(casitas)
casitas.pop <- as.factor(rep(c("dome", "cast", "musc", "casi"), 
    c(24,11,9,30)))
table(casitas.pop,casitas[,1]) 
casi.genet <- char2genet(casitas, casitas.pop)
names(casi.genet)

Worked out examples


> library(ade4)
> ### Name: casitas
> ### Title: Enzymatic polymorphism in Mus musculus
> ### Aliases: casitas
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(casitas)
> casitas.pop <- as.factor(rep(c("dome", "cast", "musc", "casi"), 
+     c(24,11,9,30)))
> table(casitas.pop,casitas[,1]) 
           
casitas.pop 080080 080100 100100
       casi      2     11     17
       cast      2      3      6
       dome      0      0     24
       musc      0      0      9
> casi.genet <- char2genet(casitas, casitas.pop)
> names(casi.genet)
[1] "tab"        "center"     "pop.names"  "all.names"  "loc.blocks"
[6] "loc.fac"    "loc.names"  "pop.loc"    "all.pop"   
> 
> 
> 
> 

[Package ade4 Index]