pap {ade4}R Documentation

Taxonomy and quantitative traits of carnivora

Description

This data set describes the taxonomy of 39 carnivora. It also gives life-history traits corresponding to these 39 species.

Usage

data(pap)

Format

pap is a list containing the 2 following objects :

taxo
is a data frame with 39 species and 3 columns.
tab
is a data frame with 39 species and 4 traits.

Details

Variables of pap$tab are the following ones : genre (genus with 30 levels), famille (family with 6 levels), superfamille (superfamily with 2 levels).

Variables of pap$tab are Group Size, Body Weight, Brain Weight, Litter Size.

Source

Data taken from the phylogenetic autocorrelation package starting from:
http://www.ent.orst.edu/pa/demopa.asp.

Examples

data(pap)
taxo <- taxo2phylog(as.taxo(pap$taxo))
table.phylog(as.data.frame(scalewt(pap$tab)), taxo, csi = 2, clabel.nod = 0.6,
 f.phylog = 0.6)

Worked out examples


> library(ade4)
> ### Name: pap
> ### Title: Taxonomy and quantitative traits of carnivora
> ### Aliases: pap
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data(pap)
> taxo <- taxo2phylog(as.taxo(pap$taxo))
> table.phylog(as.data.frame(scalewt(pap$tab)), taxo, csi = 2, clabel.nod = 0.6,
+  f.phylog = 0.6)
> 
> 
> 
> 

[Package ade4 Index]