Human BLAST Search

Click here for a description of the 2.0 version of BLAST

NB: all human sequences are retrieved from GenBank (see current release). To blast your sequence against all publicly available human genomic sequences, select database #5. This database contains all human sequences from GenBank (except ESTs and GSSs): genomic DNA (finished or draft sequences) and cDNA sequences.

Choose the program to use and the database to search:

Program: blastn tblastn Database: 1: Human ESTs 2: Human GSSs (genome survey seq.) 3: Human HTG (genome draft seq.) 4: other human (all but ESTs, HTGs, GSSs) 5: Human DNA and cDNA = 3 + 4

The query sequence is filtered for low complexity regions by default

Enter your sequence in FASTA format:

Advanced options for the BLAST server:

Expect:   0.0001 0.01 1 10 100 1000   Filter:   default none

Descriptions:   0 10 50 100 250 500 10000    Alignments:   0 10 50 100 250 500 10000

Genetic codes (blastx only):   Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Other advanced options:  

Submit/Clear query: