SampleID_vs_NumSequences
                        Plots the number of sequences and the
                        probability of sequences per SampleID.
alignment_info          Sequence Alignment and Analysis
bubble_plot_count       Bubble Plot Count Function
bubble_plot_percentage
                        Bubble Plot Percentage Function
clustering_average_similarity
                        Perform Hierarchical Clustering for average
                        similarity matrix
clustering_percent_similarity
                        Perform Hierarchical Clustering for Percent
                        Similarity
compute_average_similarity_matrix
                        Compute Average Similarity Matrix
data_sampling           Samples data from each SampleID group if
                        specified, otherwise uses the final data.
expand_accession_ranges
                        This function expands accession number ranges,
                        creating a data frame with sample and accession
                        numbers.
generate_heatmaps       Generate Heatmaps
get_sequence_information
                        Retrieves sequence information for a given list
                        of accessions.
preprocess_for_alignment
                        Preprocesses data for sequence alignment.
tree_average_similarity
                        Generate Phylogenetic Tree and Color Palette
                        for Average Similarity
tree_percent_similarity
                        Generate Phylogenetic Tree and Color Palette
                        for Percent Similarity Matrix
write_fasta             Writes a data frame to a FASTA file.
