# An R Implementation of the 'Align-GVGD' Method

## Documentation for package ‘agvgd’ version 0.1.2

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

agvgd | Align-GVGD (A-GVGD)
alignment_file | Pre-bundled alignments
amino_acids | The 20 standard amino acids
cpv_ranges | Determine CPV ranges
dev | Deviation function
gd | Grantham deviation
gv | Grantham variation
poi_to_res | Convert an alignment position to residue position
profile_to_alignment | Converts a sequence profile to an alignment
read_alignment | Read a protein sequence multiple alignment
read_substitutions | Read a file with amino acid substitutions
res_to_poi | Convert a residue position to an alignment position
write_alignment | Export an alignment to FASTA
write_substitutions | Generate and export a list of substitutions