aa0f94b04c4295a7e5a2a6a256a23bd8 *DESCRIPTION
e36c5832383c6938fffd650e85a9adcd *NAMESPACE
b2c407fa81259c17f6cf83937416272c *R/filterMAF.R
31fadff62e3387b42fcbef7f963d6ff3 *R/generateBurdenPlot.R
8cb72ed3819e38f8f3d1d4e6a2407d88 *R/generateMutationTypePlot.R
2f4754d4eed15b676a35dd1e6e7630c1 *R/generateOncoPlot.R
b3ad6ef1c2e8b6a3cd211f6020c466b1 *R/generateOverlapPlot.R
16212d9bf90449ea3c6b4175b11febee *R/generateSingleRibbonPlot.R
9e7efc873a6133ac0a577cb861909bcb *R/generateTCGAComparePlot.R
5929cfb9fc587d9368b35c198cb42089 *R/generateTiTvPlot.R
56a26d48785434c7246fec9fde81e29b *R/getMAFDashboard.R
fcfa42a28981cd23e235af98bfc2de03 *R/getMAFDataTCGA.R
ba83d0f59a762b763c39e2ca254c4c5b *R/helperFunctions.R
f5a8813a52dd708206a1aecabff60e89 *README.md
88d2fc3a8eef7c0f855230564855596a *build/vignette.rds
b2c387f1360f6c1e1b77a14df18c13ca *inst/doc/MAFDash.R
862df8c33f256e7fd3f5b3c6143b32cc *inst/doc/MAFDash.Rmd
3751907b11e42fdecc08f5e736f3a5d3 *inst/doc/MAFDash.html
5d01abe4e4c4c50600f777f04b3a0e2f *inst/extdata/MAFDash.Rmd
b8471a26715139e0eae3fc4b68b46e41 *inst/extdata/burden.Rmd
daba4fa0391b0225d670f83fecc78496 *inst/extdata/cooccurence.Rmd
2334e7cf6c372ded7c29bb62e9740428 *inst/extdata/custom_image.Rmd
91e6bc920658bd95b130ed6b25c0da2f *inst/extdata/heatmap.Rmd
990fae4905c0de3fa91abe61e00b03c8 *inst/extdata/oncoplot.Rmd
4e5b42f7ed9c10e7f5d628fff843e3f4 *inst/extdata/summary_plot.Rmd
9ae5add3488fe183ed2c7250dae189dd *inst/extdata/summary_table.Rmd
9b1fcf43438d277218c0a8d93044a844 *inst/extdata/test.bed
b8945b04447ced217d49994bc5fe186e *inst/extdata/test.clinical.txt
6df3d16e70c3a34504f2f924ca2ed8b2 *inst/extdata/test.mutect2.maf.gz
57b0637c8cfa36c946ee956c864934df *inst/extdata/variant_table.Rmd
71bc5c8e91b1a7b1825879cffa730158 *man/compute_exome_coverage.Rd
cf237edcad6544c4d0eb41d45e8d3ba9 *man/createOncoMatrix.Rd
7261b3fd11d19d92702296b6ee6584fa *man/detectMAFGenome.Rd
a55d9b2b84eda989e703b2272acb59f5 *man/filterMAF.Rd
2a9b8d131f7d060773dbb1caeded8a75 *man/filter_maf_chunked.Rd
cad56d9251da049b9ec48cb3907f7b49 *man/generateBurdenPlot.Rd
9dc86d10eac5d68e5109d6cb9cef1ac3 *man/generateMutationTypePlot.Rd
947f3be9ded7ce063b6b800bc8d889af *man/generateOncoPlot.Rd
d1fca865ed5ed538a2f681e7600f29f8 *man/generateOverlapPlot.Rd
a74bcda872dbfda1ddeda80d43f8d21b *man/generateRibbonPlot.Rd
83793bcec3f6f4c307d2907a57dc81e8 *man/generateTCGAComparePlot.Rd
24f0eab660e5749dc39bb9cda2313f1e *man/generateTiTvPlot.Rd
8951081297b63c1e678a6fd5a91c7011 *man/generateVariantTable.Rd
0e4b836333315720ece5377d50b3a52f *man/getMAFDashboard.Rd
740bd705fc1545d96cf87a6c9cc1ccf7 *man/getMAFdataTCGA.Rd
5effc569c3e8340814e89954967dc749 *man/getTCGAClinicalAnnotation.Rd
216ec82acbd651a0ae3b236f76dba302 *man/getTCGAClinicalColors.Rd
862df8c33f256e7fd3f5b3c6143b32cc *vignettes/MAFDash.Rmd
