Last updated on 2024-06-02 05:57:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 2.53 | 42.20 | 44.73 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 2.23 | 31.79 | 34.02 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 55.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 65.17 | OK | |||
| r-devel-windows-x86_64 | 0.1.2 | 3.00 | 53.00 | 56.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 3.31 | 40.32 | 43.63 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 2.28 | 40.27 | 42.55 | OK | |
| r-release-macos-arm64 | 0.1.2 | 25.00 | OK | |||
| r-release-windows-x86_64 | 0.1.2 | 4.00 | 53.00 | 57.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 27.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.2 | 67.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.2 | 3.00 | 56.00 | 59.00 | OK |
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(chemdeg)
>
> test_check("chemdeg")
Reaction order estimated: 0
Reaction order estimated: 0
Reaction order estimated: 1
Reaction order estimated: 1
Kinetic model was not found in object.
Probably the phasespace regression was not significant.
Reaction order estimated: 1.5
Reaction order estimated: 1
Reaction order estimated: 1
Reaction order estimated: 1
Reaction order estimated: 0
Reaction order estimated: 1
Reaction order estimated: 1
Reaction order estimated: 0
Reaction order estimated: 1
Reaction order estimated: 1
Reaction order estimated: 1
Reaction order estimated: 1
Reaction order estimated: 0
Linear regression in the phase space:
log(dx/dt)= -0.04 log(x) + ( -3.25 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
-0.03946285 0.33112985 -0.11917637 0.91266817
Confidence interval of n:
2.5 % 97.5 %
-1.093266 1.014340
Estimate of the intercept is significant; but the estimate of slope is not.
The data are likely to be described by an 0-order kinetic model.
Linear regression was performed (0-order kinetics).
Estimated k value:
Call:
stats::lm(formula = y ~ t, data = list(t = dframe[[1]], y = dframe[[2]]))
Residuals:
1 2 3 4 5 6
-0.009048 0.025238 -0.030476 0.023810 -0.011905 0.002381
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) 0.999048 0.017587 56.81 5.75e-07 ***
t -0.041071 0.001452 -28.28 9.30e-06 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 0.0243 on 4 degrees of freedom
Multiple R-squared: 0.995, Adjusted R-squared: 0.9938
F-statistic: 799.9 on 1 and 4 DF, p-value: 9.3e-06
Confidence interval of k:
2.5 % 97.5 %
0.04510334 0.03703951
-----------------------------------------------------
Reaction order estimated: 1
Linear regression in the phase space:
log(dx/dt)= 0.89 log(x) + ( -1.91 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
0.888563736 0.127851818 6.949949979 0.006110383
Confidence interval of n:
2.5 % 97.5 %
0.4816822 1.2954453
Statistical analysis indicates that an order 1 degradation kineitc model is likely to describe the data.
The null hypothesis H0:
"The process is described by an order 1kinetic model"
cannot be rejected.
Non-linear least squares regression was performed with an order 1 kinetic model:
Estimate of k:
Estimate Std. Error t value Pr(>|t|)
k 0.1738856 0.002646756 65.69763 1.546955e-08
Waiting for profiling to be done...
Confidence interval of k:
2.5% 97.5%
0.1673077 0.1808505
Goodness-of-fit:
Value
AIC: -36.613622360
AICc: -35.613622360
BIC: -37.030103421
RMSE: 0.008984573
Chi-sq_red: NA
NB: Reduced Chi-squared is not calculated with unweighted data
-----------------------------------------------------
Linear regression in the phase space:
log(dx/dt)= -0.2 log(x) + ( -2.25 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
-0.1972895 0.9500588 -0.2076603 0.8547198
Confidence interval of n:
2.5 % 97.5 %
-4.285062 3.890483
The process is not appropriately described by a standard n-order kinetic model. Alternative models should be evaluated.
-----------------------------------------------------
Reaction order estimated: 1.4
Linear regression in the phase space:
log(dx/dt)= 1.44 log(x) + ( -1.92 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
1.435918e+00 5.165275e-02 2.779944e+01 1.021746e-04
Confidence interval of n:
2.5 % 97.5 %
1.271536 1.600300
The confidence interval of n excludes integer-valued orders.
The best estimate n= 1.4 was used to perform the regression.
Non-linear least squares regression was performed with an order 1.4 kinetic model:
Estimate of k:
Estimate Std. Error t value Pr(>|t|)
k 0.05819536 0.0006888422 84.48287 4.403611e-09
Waiting for profiling to be done...
Confidence interval of k:
2.5% 97.5%
0.05645665 0.06001526
Goodness-of-fit:
Value
AIC: -13.205197
AICc: -12.205197
BIC: -13.621678
RMSE: 2.012016
Chi-sq_red: 6.166408
-----------------------------------------------------
Reaction order estimated: 0
Linear regression in the phase space:
log(dx/dt)= 8.62 log(x) + ( -2.22 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
8.6222350 6.5703303 1.3122986 0.2807935
Confidence interval of n:
2.5 % 97.5 %
-12.28749 29.53196
Estimate of the intercept is significant; but the estimate of slope is not.
The data are likely to be described by an 0-order kinetic model.
Estimates of model parameters are not significant. Alternative models should be evaluated.
Linear regression in the phase space:
log(dx/dt)= 8.62 log(x) + ( -2.22 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
8.6222350 6.5703303 1.3122986 0.2807935
Confidence interval of n:
2.5 % 97.5 %
-12.28749 29.53196
Estimate of the intercept is significant; but the estimate of slope is not.
The data are likely to be described by an 0-order kinetic model.
Estimates of model parameters are not significant. Alternative models should be evaluated.Reaction order estimated: 1
Linear regression in the phase space:
log(dx/dt)= 1.02 log(x) + ( -0.77 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
1.015092e+00 3.052917e-02 3.324993e+01 5.979796e-05
Confidence interval of n:
2.5 % 97.5 %
0.9179351 1.1122499
Statistical analysis indicates that an order 1 degradation kineitc model is likely to describe the data.
The null hypothesis H0:
"The process is described by an order 1kinetic model"
cannot be rejected.
Estimates of model parameters are not significant. Alternative models should be evaluated
Linear regression in the phase space:
log(dx/dt)= 1.02 log(x) + ( -0.77 )
Estimate of n:
Estimate Std. Error t value Pr(>|t|)
1.015092e+00 3.052917e-02 3.324993e+01 5.979796e-05
Confidence interval of n:
2.5 % 97.5 %
0.9179351 1.1122499
Statistical analysis indicates that an order 1 degradation kineitc model is likely to describe the data.
The null hypothesis H0:
"The process is described by an order 1kinetic model"
cannot be rejected.
Estimates of model parameters are not significant. Alternative models should be evaluatedReaction order estimated: 1.4
Reaction order estimated: 1.4
Reaction order estimated: 0
Reaction order estimated: 0
NB: parameters of the regression are not significant!
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 137 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-det_order.R:228:3'): det_order works with 2-order model with unweighted data ──
res[[6]] (`actual`) not equal to c(Order = 2) (`expected`).
`actual`: NaN
`expected`: 2
── Failure ('test-det_order.R:229:3'): det_order works with 2-order model with unweighted data ──
k_value(res) (`actual`) not equal to c(k = 0.5) (`expected`).
`actual` is NULL
`expected` is a double vector (0.5)
── Failure ('test-det_order.R:230:3'): det_order works with 2-order model with unweighted data ──
res[[4]] is not an S3 object
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 137 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang