Last updated on 2026-02-11 06:52:21 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| miesmuschel | 13 | ||
| mlr | 2 | 11 | |
| mlr3pipelines | 3 | 10 | |
| paradox | 13 | ||
| ParamHelpers | 13 |
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 2.19.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Rmpi’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.19.3
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 2.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 3, OK: 10
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [108s/52s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-11 17:24:07.976049: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:07.976327: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:07.979447: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:07.985718: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:07.997856: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:07.997983: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.00025: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.006291: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.013227: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.013393: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.017748: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.032442: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.032788: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.038875: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.038999: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.043397: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.058727: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.059074: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.078899: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.079021: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.088098: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.121689: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.129995: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.130151: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.138856: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.219089: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.220205: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.253664: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.253799: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.256155: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.262348: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.269654: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.269826: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.279449: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.294622: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.295048: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.327894: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.328047: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.330332: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.336456: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.348006: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.348178: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.352572: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.367956: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.368362: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.38646: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.386584: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.388755: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.394508: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.405621: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.405792: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.439559: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.452549: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.452907: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.47091: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.471067: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.473826: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.479952: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.493213: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.493403: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.497941: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.513224: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.513662: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.533342: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.533491: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.535846: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.541933: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.55271: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.55289: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.556922: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.570965: embedding
> test_pipeop_isomap.R: 2026-02-11 17:24:08.571309: DONE
> test_pipeop_isomap.R: 2026-02-11 17:24:08.590493: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.590638: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.592926: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.598915: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.617794: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.61795: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.626474: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.632699: Classical Scaling
> test_pipeop_isomap.R: 2026-02-11 17:24:08.641222: Isomap START
> test_pipeop_isomap.R: 2026-02-11 17:24:08.641346: constructing knn graph
> test_pipeop_isomap.R: 2026-02-11 17:24:08.643594: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-11 17:24:08.649491: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3042771')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [377s/493s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-10 19:39:16.942735: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:16.943877: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:16.963956: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:17.029872: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:17.172605: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:17.173377: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:17.21783: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:17.271517: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:17.31823: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:17.320114: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:17.356626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:17.496612: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:17.49784: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:17.548792: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:17.54911: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:17.605955: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:17.717108: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:17.749303: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:18.17842: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:18.178744: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:18.230533: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:18.618684: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:18.696997: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:18.697474: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:18.828087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:19.472741: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:19.476863: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:19.845311: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:19.846179: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:19.856254: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:19.91081: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:19.984043: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:19.984704: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:20.019703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:20.141757: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:20.142924: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:20.496167: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:20.496538: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:20.516047: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:20.571033: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:20.687128: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:20.710942: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:20.733379: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:20.851531: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:20.881106: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:21.045459: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:21.046006: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:21.1321: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:21.171059: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:21.303454: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:21.304604: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:21.388007: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:21.482946: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:21.484722: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:21.723549: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:21.739961: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:21.748201: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:21.784164: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:21.901526: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:21.903232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:21.949647: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:22.091894: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:22.094456: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:22.29018: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:22.290753: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:22.298753: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:22.373646: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:22.498426: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 19:39:22.498884: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:22.527985: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:22.726944: embedding
> test_pipeop_isomap.R: 2026-02-10 19:39:22.729453: DONE
> test_pipeop_isomap.R: 2026-02-10 19:39:23.007611: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:23.007911: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:23.05497: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:23.102673: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:23.309945: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:23.310417: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:23.319988: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:23.344905: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 19:39:23.436733: Isomap START
> test_pipeop_isomap.R: 2026-02-10 19:39:23.437062: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 19:39:23.457511: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 19:39:23.50527: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [297s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-04 14:38:37.85581: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:37.856566: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:37.95393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:37.975298: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:38.048079: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.048774: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.058092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:38.077872: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:38.117402: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.118337: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.135238: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:38.178244: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:38.723765: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:38.759236: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.759695: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.772591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:38.815495: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:38.817234: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:38.948538: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.949177: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.970247: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.087581: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:39.148781: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:39.149726: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:39.207946: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.436234: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:39.44183: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:39.685675: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:39.686348: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:39.699048: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.721448: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:39.773411: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:39.774336: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:39.79829: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.844122: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:39.845943: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:40.064832: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.065474: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.077481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.099369: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:40.174067: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.174959: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.197141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.245944: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:40.247794: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:40.372332: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.372959: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.3848: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.407012: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:40.503427: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.504425: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.529211: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.592265: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:40.600221: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:40.722223: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.722869: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.733496: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.756135: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:40.834374: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.835035: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.854837: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.90243: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:40.903917: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:41.021478: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.022139: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.033626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.056134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:41.126564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.127518: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.148435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.19979: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:41.201246: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:41.338032: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.338671: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.349286: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.372794: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:41.50814: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.508787: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.542287: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.565956: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:41.605449: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.606103: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.618497: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.641186: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13