ACUTS: Ancient Conserved UnTranslated Sequences

The database currently contains 176 entries describing highly conserved untranslated sequences. About 150 other conserved elements remain to be processed (see list).

The following data have been included in each entry (see database format):

Age of conserved elements (i.e., the approximative time of divergence between the species in which the conserved element is detected).
Location of conserved elements (5'flank, 5'UTR, intron, 3'UTR or 3'flank).
List of sequences available in different species, with cross-references to the EMBL data library.
Informations relative to the function of the gene, its expression (most of these data come from SWISS-PROT). Whenever possible, we added information about the function of conserved elements.
Bibliographic references of papers giving information about the function of conserved elements, with cross-references to MEDLINE.
Precise positions of conserved elements and other relevant biological features within the alignment (when available). Different type of conserved elements (HCRs) are described, according to their age: HCR310 for elements conserved at least since mammals/birds divergence (~310 Myrs), HCR350 for elements conserved at least since amphibians divergence (~350 Myrs), etc.

For each entry, we also provide the corresponding non-coding sequences in FASTA format (SEQ). When available, alignements are proposed in MSF format or in MASE format (to be used with the SeaView multiple sequence alignment editor).

ACTAC_3UT    SEQ/MSF/MASE ACTIN, ALPHA CARDIAC  3'UTR AND 3'FLANK. 
ACTAS_3UT    SEQ/MSF/MASE ACTIN, ALPHA SKELETAL MUSCLE, 3'UTR. 
ACTB_3UT     SEQ/MSF/MASE ACTIN, CYTOPLASMIC BETA, 3'UTR AND 3'FLANK. 
ACTB_5NC     SEQ          ACTIN, CYTOPLASMIC BETA, PROMOTER AND FIRST INTRON. 
ACTB_IN3     SEQ/MSF/MASE ACTIN, CYTOPLASMIC BETA, THIRD INTRON. 
ACTG_3UT     SEQ/MSF/MASE ACTIN, CYTOSKELETAL GAMMA, 3'UTR. 
ACTSA_5NC    SEQ/MSF/MASE ACTIN, AORTIC SMOOTH MUSCLE (ALPHA-ACTIN) PROMOTER REGION AND FIRST  INTRON. 
ALK5_3UT     SEQ/MSF/MASE ACTIVIN RECEPTOR-LIKE KINASE (ALK-5/RPK-2/TGF-BETA TYPE I  RECEPTOR/X-TRR1) 3'UTR. 
A4_3UT       SEQ/MSF/MASE BETA-AMYLOID PLAQUE CORE PROTEIN A4 3'UTR. 
AACT_3UT     SEQ/MSF/MASE ALPHA-ACTININ, 3'UTR. 
AMPH_3UT     SEQ/MSF/MASE AMPHIPHYSIN (SYNAPTIC VESICLE-ASSOCIATED PROTEIN), 3'UTR. 
ASH1_3UT     SEQ/MSF/MASE ACHAETE-SCUTE HOMOLOG 1 (ASH-1) 3'UTR. 
ATNB_3UT     SEQ/MSF/MASE NA, K-ATPASE BETA-1 SUBUNIT, 3'UTR. 
ATND_3UT     SEQ/MSF/MASE NA, K-ATPASE BETA-3 SUBUNIT. 
AVR2_3UT     SEQ/MSF/MASE ACTIVIN RECEPTOR TYPE II PRECURSOR (ACTR-II) 3'UTR. 
B1AR_3UT     SEQ/MSF/MASE BETA 1 ADRENERGIC RECEPTOR 3'UTR. 
BCL2_3UT     SEQ/MSF/MASE B-CELL LEUKEMIA/LYMPHOMA 2 (BCL-2) PROTO-ONCOGENE, ALPHA ISOFORM 3'UTR. 
BDNF_3UT     SEQ/MSF/MASE BRAIN-DERIVED NEUROTROPHIC FACTOR, 3'UTR. 
BDNF_5UT     SEQ/MSF/MASE BRAIN-DERIVED NEUROTROPHIC FACTOR (BDNF), 5'UTR AND 5'FLANK. 
BEN_3UT      SEQ          BEN TRANSMEMBRANE GLYCOPROTEIN (BEN, DM-GRASP, SC1, ALCAM) 3'UTR. 
BMP2_3UT     SEQ/MSF/MASE BONE MORPHOGENETIC PROTEIN 2 PRECURSOR (BMP-2) 3'UTR. 
BMP4_3UT     SEQ/MSF/MASE BONE MORPHOGENETIC PROTEIN 4 PRECURSOR (BMP-4), 3'UTR. 
BRAIN4_3UT   SEQ/MSF/MASE BRAIN-4, POU-DOMAIN PROTEIN, 3'UTR. 
BSK_3UT      SEQ/MSF/MASE BRAIN-SPECIFIC RECEPTOR-TYPE PROTEIN-TYROSINE KINASE  (BSK/HEK7/CEK7/EHK-1). 
BTG1_3UT     SEQ/MSF/MASE BTG1 ANTI-PROLIFERATIVE FACTOR, 3'UTR. 
CABA_3UT     SEQ/MSF/MASE CARG-BINDING FACTOR-A (CBF-A / HNRNP TYPE A/B / SINGLE-STRAND D-BOX  BINDING FACTOR / CRP1) 3'UTR. 
CABV_3UT     SEQ/MSF/MASE CALBINDIN-D28K (VITAMIN D-DEPENDENT CALCIUM-BINDING  PROTEIN/CABP/SPOT35/CALB1) 3'UTR AND 3'FLANK. 
CADN_3UT     SEQ/MSF/MASE NEURAL CADHERIN (N-CADHERIN) 3'UTR. 
CADT_3UT     SEQ          T-CADHERIN PRECURSOR (TRUNCATED-CADHERIN), 3'UTR. 
CALD_3UT     SEQ/MSF/MASE CALDESMON 3'UTR. 
CALM2_3UT    SEQ/MSF/MASE CALMODULIN II 3'UTR. 
CAZ2_3UT     SEQ/MSF/MASE CAPPING PROTEIN ALPHA 2 ISOFORM (CAPZ2) 3'UTR. 
CKB_3UT      SEQ/MSF/MASE CREATINE KINASE B (BRAIN CREATINE KINASE), 3'UTR AND 3'FLANK. 
CKIT_3UT     SEQ/MSF/MASE C-KIT PROTO-ONCOGENE 3'UTR. 
CNBP_3UT     SEQ/MSF/MASE CELLULAR NUCLEIC ACID BINDING PROTEIN (CNBP), 3'UTR. 
CNP_3UT      SEQ/MSF/MASE C-TYPE NATRIURETIC PEPTIDE, 3'UTR. 
COF2_3UT     SEQ/MSF/MASE COFILIN, MUSCLE ISOFORM 3'UTR. 
COL1A1_5NC   SEQ/MSF/MASE PRO-ALPHA 1(I) COLLAGEN, 5'UTR AND PROMOTER REGION. 
COL1A2_3UT   SEQ/MSF/MASE PRO-ALPHA 2(I) COLLAGEN, 3'UTR. 
COL6A3_3UT   SEQ/MSF/MASE TYPE VI COLLAGEN ALPHA3 CHAIN, 3'UTR. 
CONT_3UT     SEQ/MSF/MASE CONTACTIN NEURAL CELL RECOGNITION MOLECULE (F3/F11/CNTN1) 3'UTR. 
COTF1_3UT    SEQ/MSF/MASE COUP-TF1 (CHICKEN OVALBUMIN UPSTREAM PROMOTER TRANSCRIPTION FACTOR 1)  (SVP 44/EAR-3) 3'UTR. 
CRK_3UT      SEQ/MSF/MASE PROTO-ONCOGENE NON-RECEPTOR CLASS TYROSINE KINASE (C-CRK), 3'UTR. 
CTCF_3UT     SEQ/MSF/MASE TRANSCRIPTIONAL REPRESSOR (CTCF), 3'UTR. 
CYCA2_3UT    SEQ/MSF/MASE CYCLIN A2 3'UTR. 
DEFI_3UT     SEQ/MSF/MASE DELTAEF1 TRANSCRIPTIONAL REPRESSOR 3'UTR. 
DLX3_3UT     SEQ/MSF/MASE DISTAL-LESS HOMEODOMAIN PROTEIN (DLX-3) 3'UTR. 
DMB_3UT      SEQ/MSF/MASE PROTEOLIPID PROTEIN DM BETA, 3'UTR. 
DMDB_5UT     SEQ/MSF/MASE DYSTROPHIN (DMD), BRAIN-SPECIFIC ISOFORM 5'UTR. 
DMD_3UT      SEQ/MSF/MASE DYSTROPHIN (DMD), 3'UTR. 
EF1A_3UT     SEQ/MSF/MASE ELONGATION FACTOR EF-1 ALPHA, 3'UTR. 
EK8_3UT      SEQ/MSF/MASE EK8 EPH-RELATED RECEPTOR PROTEIN-TYROSINE KINASE (CEK8, HEK8, SEK, PAG)  3'UTR. 
ELRD_3UT     SEQ/MSF/MASE ELRD (ELAV-LIKE PROTEIN D, NEURONAL RNA-BINDING PROTEIN, HUD) 3'UTR. 
ENOL_3UT     SEQ/MSF/MASE ALPHA-ENOLASE, 3'UTR. 
ERK2_3UT     SEQ/MSF/MASE EXTRACELLULAR SIGNAL-REGULATED KINASE 2 (MYELIN BASIC PROTEIN KINASE,  MBP KINASE, MICROTUBULE-ASSOCIATED PROTEIN-2 KINASE, M PHASE MAP KINASE)  3'UTR. 
FGFR1_3UT    SEQ/MSF/MASE BASIC FIBROBLAST GROWTH FACTOR RECEPTOR 1 (FGFR1, TYROSINE KINASE CEK1,  N-SAM, HEPARIN-BINDING GROWTH FACTOR RECEPTOR) 3'UTR. 
FINC_3UT     SEQ/MSF/MASE FIBRONECTIN 3'UTR. 
FOS_3UT      SEQ/MSF/MASE C-FOS ONCOGENE, 3'UTR. 
FOS_IN1      SEQ/MSF/MASE C-FOS ONCOGENE, FIRST INTRON. 
FRA2_5NC     SEQ          FRA-2 ONCOGENE (FOS-RELATED ANTIGEN 2) 5'UTR AND PROMOTER REGION. 
GAA1_5NC     SEQ          GABA-A/BENZODIAZEPINE (GABA-A/BZ) RECEPTOR ALPHA-1 SUBUNIT, 5'UTR AND  PROMOTER. 
GAB2_5UT     SEQ          GABA-A RECEPTOR, BETA-2 SUBUNIT, 5'UTR. 
GABAAR_5UT   SEQ/MSF/MASE GABA-A RECEPTOR GAMMA-2 SUBUNIT, 5'UTR. 
GATA3_3UT    SEQ/MSF/MASE TRANS-ACTING T-CELL SPECIFIC TRANSCRIPTION FACTOR GATA-3, 3'UTR. 
GBI1_3UT     SEQ/MSF/MASE GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-1 SUBUNIT (ADENYLATE  CYCLASE-INHIBITING) 3'UTR. 
GLUR2_3UT    SEQ/MSF/MASE GLUTAMATE RECEPTOR 2 (GLUR-2), CDS AND 3'UTR. 
GLUR3_3UT    SEQ/MSF/MASE GLUTAMATE RECEPTOR 3 (GLUR-3) 3'UTR. 
GLUT1_3UT    SEQ/MSF/MASE GLUCOSE TRANSPORTER TYPE 1 (GLUT-1), 3'UTR. 
GR78_3UT     SEQ/MSF/MASE 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78/IMMUNOGLOBULIN HEAVY  CHAIN BINDING PROTEIN/BIP), 3'UTR. 
H33A_3UT     SEQ/MSF/MASE HISTONE REPLACEMENT VARIANT H3.3A, 3'UTR. 
H33B_3UT     SEQ/MSF/MASE HISTONE REPLACEMENT VARIANT H3.3B, 3'UTR. 
H3_5NC       SEQ          HISTONE H3, 5'NON-CODING REGION. 
HIS1_5NC     SEQ          HISTONE H1, 5'UTR AND PROMOTER REGION. 
HMG14A_3UT   SEQ/MSF/MASE NONHISTONE CHROMOSOMAL PROTEIN HMG-14A, 3'UTR. 
HMG14B_3UT   SEQ/MSF/MASE NONHISTONE CHROMOSOMAL PROTEIN HMG-14B, 3'UTR AND 3'FLANK. 
HMG17_3UT    SEQ/MSF/MASE CHROMOSOMAL PROTEIN HMG-17, 3'UTR AND 3'FLANK. 
HMG17_5NC    SEQ          CHROMOSOMAL PROTEIN HMG-17, 5'UTR AND 5'FLANK. 
HMG1_3UT     SEQ/MSF/MASE HIGH-MOBILITY-GROUP PROTEIN (HMG-1) 3'UTR. 
HMG2A_3UT    SEQ          HIGH-MOBILITY-GROUP PROTEIN (HMG-2A) 3'UTR. 
HMG2_3UT     SEQ/MSF/MASE HIGH-MOBILITY-GROUP PROTEIN (HMG-2) 3'UTR. 
HNF1A_5NC    SEQ          HEPATOCYTE NUCLEAR FACTOR 1-ALPHA (HNF-1A, LIVER SPECIFIC TRANSCRIPTION  FACTOR LF-B1, LFB1) 5'UTR AND PROMOTER REGION. 
HNRNPA2_3UT  SEQ/MSF/MASE HETEROGENEOUS RIBONUCLEOPROTEIN A2/B1 (HNRNP-A2 HNRNP-B1), 3'UTR. 
HNRNPA3_3UT  SEQ/MSF/MASE HETEROGENEOUS RIBONUCLEOPROTEIN A3 (HNRNP-A3), 3'UTR. 
HOX3_5UT     SEQ/MSF/MASE HOXB3 AND HOXD3 5'UTR. 
HOX7_3UT     SEQ/MSF/MASE HOMEOBOX PROTEIN HOX-7 (MSX-1) 3'UTR. 
HOXA5_3UT    SEQ/MSF/MASE HOMEOBOX PROTEIN HOX-A5 (HOX-1C, HOX-1.3), 3'UTR. 
HOXA7_5UT    SEQ/MSF/MASE HOMEOBOX PROTEIN HOX-A7 (HOX-1.1), 5'UTR. 
HOXB4_5UT    SEQ/MSF/MASE HOMEOBOX PROTEIN HOX-B4 (CHOX-Z, HOX-2.6) 5'UTR. 
HOXB5_5NC    SEQ/MSF/MASE HOX-B5 (ZF-21/HOX-2A/HOX-21) AND HOX-A5 (HOX-1.3/HOX-1C) 5'UTR AND  5'FLANK. 
HOXB7_5UT    SEQ          HOMEOBOX PROTEIN HOX-B7 (HOX-2.3/XLHBOX-2/HOX-2C/HOMEO BOX C1) 5'UTR. 
HOXC6_3UT    SEQ/MSF/MASE HOMEOBOX PROTEIN HOX-C6 (NVHOX-1/HOX-3.3/HOX-6.1/XLHBOX-1) PRII  TRANSCRIPT 3'UTR. 
HOXC6_5UT    SEQ/MSF/MASE HOMEOBOX PROTEIN HOX-C6 (NVHOX-1/HOX-3.3/HOX-6.1/XLHBOX-1) PRII  TRANSCRIPT 5'UTR. 
HOXD4_5UT    SEQ          HOMEOBOX PROTEIN HOX-D4 (HOX-4B/HOX-5.1/HHO.C13/CHOX-A) AND HOX-C4  (HOX-3.5) 5'UTR. 
IGF1_5NC     SEQ/MSF/MASE INSULIN-LIKE GROWTH FACTOR (IGF-I), PROMOTER AND 5'UTR. 
IRK1_3UT     SEQ/MSF/MASE INWARD RECTIFIER POTASSIUM CHANNEL IRK1 3'UTR. 
IRK1_5UT     SEQ/MSF/MASE INWARD RECTIFIER POTASSIUM CHANNEL IRK1 5'UTR. 
ISL1_3UT     SEQ/MSF/MASE INSULIN GENE ENHANCER BINDING PROTEIN (ISLET-1) 3'UTR. 
JUN_3UT      SEQ/MSF/MASE C-JUN PROTO-ONCOGENE (AP-1) 3'UTR. 
KINECT_3UT   SEQ/MSF/MASE KINECTIN (KINESIN-BINDING PROTEIN), 3'UTR. 
LAMP1_3UT    SEQ          LYSOSOMAL MEMBRANE GLYCOPROTEIN LAMP-1 (LEP100/LGPA/LGP-120) 3'UTR. 
MACS_3UT     SEQ/MSF/MASE MYRISTOYLATED ALANINE-RICH C KINASE SUBSTRATE (MACS) 3'UTR. 
MAFB_3NC     SEQ          MAFB BZIP NUCLEAR PROTEIN 3'UTR AND 3'FLANK. 
MBP_3UT      SEQ/MSF/MASE MYELIN BASIC PROTEIN (MBP) 3'UTR. 
MCR_3UT      SEQ/MSF/MASE MINERALOCORTICOID RECEPTOR, 3'UTR. 
MHCNMA_3UT   SEQ/MSF/MASE NONMUSCLE MYOSIN HEAVY CHAIN-A 3'UTR. 
MHCNMB_3UT   SEQ/MSF/MASE NONMUSCLE MYOSIN HEAVY CHAIN-B 3'UTR. 
MHC_3UT      SEQ/MSF/MASE MUSCLE MYOSIN HEAVY CHAIN, SKELETAL ISOFORMS 3'UTR. 
MHC_5FL      SEQ/MSF/MASE ADULT AND EMBRYONIC MYOSIN HEAVY CHAIN PROMOTER REGION. 
MLC_5NC      SEQ          MLC1F/MLC3F FAST SKELETAL MUSCLE MYOSIN ALKALI LIGHT CHAIN, 5'REGION. 
MRLC_3UT     SEQ/MSF/MASE MYOSIN REGULATORY LIGHT CHAIN, 3'UTR (MAMMALIAN ISOFORMS A AND B). 
MYB_5NC      SEQ          C-MYB ONCOGENE, PROMOTER REGION. 
MYB_IN1      SEQ/MSF/MASE C-MYB ONCOGENE, INTRON 1. 
MYCN_3UT     SEQ/MSF/MASE N-MYC PROTO-ONCOGNE, 3'UTR. 
MYCN_IN2     SEQ          N-MYC PROTO-ONCOGNE, 2ND INTRON. 
MYC_3UT      SEQ/MSF/MASE C-MYC PROTO-ONCOGENE, 3'UTR. 
NCAM_3UT     SEQ/MSF/MASE N-CAM NEURAL CELL ADHESION MOLECULE, 3'UTR OF NCAM-140 AND NCAM-180  ISOFORMS. 
NDF_3UT      SEQ/MSF/MASE NEU DIFFERENTIATION FACTOR (NDF, HEREGULIN, ARIA, GP30) 3'UTR. 
NF1B_5UT     SEQ/MSF/MASE NUCLEAR FACTOR I-B 5'UTR. 
NFIA_3UT     SEQ/MSF/MASE NUCLEAR FACTOR I-A 3'UTR. 
NFM_3UT      SEQ/MSF/MASE MIDDLE-MOLECULAR WEIGHT NEUROFILAMENT (NF-M) 3'UTR AND 3'FLANK. 
NGF_3UT      SEQ/MSF/MASE BETA-NERVE GRONTH FACTOR, 3'UTR AND 3'FLANK. 
NPY_3UT      SEQ/MSF/MASE NEUROPEPTIDE Y, 3'UTR AND 3'FLANK. 
ODC_3UT      SEQ/MSF/MASE ORNITHINE DECARBOXYLASE 3'UTR. 
P2BA_3UT     SEQ/MSF/MASE CALCINEURIN A ALPHA (PROTEIN PHOSPHATASE-2B CATALYTIC SUBUNIT, ALPHA  ISOFORM) 3'UTR. 
PABP_3UT     SEQ/MSF/MASE POLYA BINDING PROTEIN, 3'UTR. 
PACAP_3UT    SEQ/MSF/MASE PACAP (PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE) 3'UTR. 
PAM_3UT      SEQ/MSF/MASE PAM (PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE) 3'UTR. 
PAX6_3UT     SEQ/MSF/MASE PAX-6 TRANSCRIPTION FACTOR (PAIRED BOX PROTEIN) 3'UTR. 
PGCS_3UT     SEQ/MSF/MASE PROTEOGLYCAN PRECURSOR (VERSICAN / CHONDROITIN SULFATE PROTEOGLYCAN CORE  PROTEIN 2) 3'UTR AND 3'FLANK. 
PGS2_5UT     SEQ/MSF/MASE BONE PROTEOGLYCAN II PRECURSOR (PG-S2, DECORIN) 5'UTR. 
PLK_3UT      SEQ/MSF/MASE PROTEOGLYCAN LINK PROTEIN PRECURSOR (CARTILAGE LINK PROTEIN/CRTL1) 3'UTR. 
PLK_5UT      SEQ          PROTEOGLYCAN LINK PROTEIN PRECURSOR (CARTILAGE LINK PROTEIN/CRTL1) 5'UTR. 
POR2_3UT     SEQ/MSF/MASE VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 2 (VDAC2, PORIN),  3'UTR. 
PP1B_3UT     SEQ/MSF/MASE SERINE/THREONINE PROTEIN PHOSPHATASE PP1-BETA CATALYTIC SUBUNIT, 3'UTR. 
PP1M_3UT     SEQ/MSF/MASE 130 KDA MYOSIN-BINDING SUBUNIT OF SMOOTH MYOSIN PHOSPHATASE, 3'UTR. 
PTBASF_3UT   SEQ/MSF/MASE PTB-ASSOCIATED SPLICING FACTOR 3'UTR. 
PTPA_3UT     SEQ/MSF/MASE PROTEIN TYROSINE PHOSPHATASE ALPHA 3'UTR. 
PTPZ_3UT     SEQ/MSF/MASE PROTEIN TYROSINE PHOSPHATASE ZETA, 3'UTR. 
RAF_3UT      SEQ/MSF/MASE C-RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE, 3'UTR. 
RAN_3UT      SEQ/MSF/MASE RAN RAS-LIKE PROTEIN 3'UTR. 
RAP1A_3UT    SEQ/MSF/MASE RAP1A AND RAP1B RAS-RELATED PROTEINS, 3'UTR. 
RARB2_5UT    SEQ          RETINOIC ACID RECEPTOR BETA-2 (RAR-BETA-2) (RAR-EPSILON) 5'UTR. 
SCF_3UT      SEQ/MSF/MASE STEM CELL FACTOR PRECURSOR (SCF, MAST CELL GROWTH FACTOR, MGF, C-KIT  LIGAND, KL), 3'UTR. 
SCG10_5UT    SEQ/MSF/MASE SCG10 5'UTR. 
SEMD_3UT     SEQ/MSF/MASE SEMAPHORIN D (COLLAPSIN/SEMAPHORIN-III) 3'UTR. 
SERCA2_3UT   SEQ/MSF/MASE SARCOPLASMIC RETICULUM CA2+ ATPASE (SERCA2), CLASS 1 AND CLASS2 3'UTRS. 
SKI_3UT      SEQ/MSF/MASE SKI PROTO-ONCOGENE 3'UTR. 
SNAP25_3UT   SEQ/MSF/MASE SYNAPTOSOMAL ASSOCIATED PROTEIN 25 (SNAP-25) 3'UTR. 
STHM_3UT     SEQ/MSF/MASE STATHMIN (PHOSPHOPROTEIN P19/ONCOPROTEIN P18/PR22 PROTEIN) 3'UTR. 
SUI1_3UT     SEQ/MSF/MASE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG, 3'UTR. 
SYT1_3UT     SEQ/MSF/MASE SYNAPTOTAGMIN (P65 SYNAPTIC VESICLE PROTEIN) 3'UTR. 
TF4_3UT      SEQ/MSF/MASE HELIX-LOOP-HELIX TRANSCRIPTION FACTOR TF4 (HEB), 3'UTR. 
TFR_3UT      SEQ/MSF/MASE TRANSFERRIN RECEPTOR, 3'UTR. 
TGFB2_3UT    SEQ/MSF/MASE TRANSFORMING GROWTH FACTOR-BETA2 3'UTR. 
TGFB2_5NC    SEQ          TRANSFORMING GROWTH FACTOR BETA-2 (TGFB2) 5'UTR AND PROMOTER REGION. 
TGLC_5UT     SEQ          TRANSGLUTAMINASE 5'UTR. 
TLX_3UT      SEQ/MSF/MASE NUCLEAR RECEPTOR TLX (=TAILLESS HOMOLOG) 3'UTR. 
TOPAP_3UT    SEQ/MSF/MASE TOP AP, SARCOLEMMAL ASSOCIATED PROTEIN-2, 3'UTR. 
TPMA_3UT     SEQ/MSF/MASE TROPOMYOSIN ALPHA CHAIN (SMOOTH MUSCLE AND NON-MUSCLE ISOFORMS) 3'UTR  AND 3'FLANK. 
TPMA_5NC     SEQ          TROPOMYOSIN ALPHA CHAIN (SMOOTH MUSCLE AND SKELETAL MUSCLE ISOFORMS),  5'UTR AND 5'FLANK. 
TPMB3_5NC    SEQ/MSF/MASE NONMUSCLE BETA-TROPOMYOSIN, 5'NON-CODING REGION. 
TRKB_3UT     SEQ/MSF/MASE TRKB TYROSINE PROTEIN KINASE RECEPTOR (BDNF RECEPTOR), 3'UTR. 
TSC22_3UT    SEQ/MSF/MASE TSC-22 (TGF-BETA 1 INDUCIBLE LEUCINE ZIPPER PROTEIN) 3'UTR. 
TWIST_3UT    SEQ/MSF/MASE TWIST BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR 3'UTR. 
TYB4_3UT     SEQ/MSF/MASE THYMOSIN BETA-4 3'UTR. 
TYY1_3UT     SEQ/MSF/MASE TRANSCRIPTIONAL REPRESSOR PROTEIN YY1 (DELTA TRANSCRIPTION  FACTOR/NF-E1/UCRBP) 3'UTR. 
V1P_3UT      SEQ/MSF/MASE V-1 PROTEIN, 3'UTR. 
V1_3UT       SEQ/MSF/MASE V1 PROTEIN, 3'UTR. 
VHH1_5UT     SEQ/MSF/MASE HEDGEHOG MORPHOGEN PROTEIN (VHH-1, SONIC HEDGEHOG, SHH) 5'UTR. 
VILIP_3UT    SEQ          VILIP (VISININ-LIKE CA2+-BINDING PROTEIN TYPE 1) 3'UTR. 
VIME_3UT     SEQ/MSF/MASE VIMENTIN 3'UTR. 
VLDLR_3UT    SEQ/MSF/MASE VERY LOW DENSITY LIPOPROTEIN RECEPTOR (VLDLR) 3'UTR. 
WNT5A_3UT    SEQ/MSF/MASE PROTO-ONCOGENE WNT-5A 3'UTR. 
XSYMC_3UT    SEQ/MSF/MASE SUPPRESSOR OF YEAST MITOTIC CATASTROPHE, 3'UTR. 
YB1_3UT      SEQ/MSF/MASE Y BOX BINDING PROTEIN 1 FAMILY 3'UTR.

If you have problems or comments...

Back to PBIL home page