ACUTS: Ancient Conserved UnTranslated Sequences

Below is the list of 150 conserved elements that have been detected but that have not been fully analysed yet. They will be progressively entered in the ACUTS database. If you are particularly interested in one of them, send a message to Laurent Duret, so that we analyse it as soon as possible.

 HCR00152 3'UTR  ATPase H+ subunit A, A2 isoform vacuolar 
 HCR01265 3'UTR  ATPase Na,K alpha-1 subunit
 HCR00138 3'UTR  B/HLH/Z protein (Myn, Max)
 HCR00351 3'UTR  BMP receptor, morphogenetic protein type IA receptor, ALK-3
 HCR01629 3'UTR  DNA topoisomerase I (TOP1) 
 HCR03947 3'UTR  ERGB transcription factor (FLI-1 homolog), XLFLI, HUMFLI-1
 HCR00208 3'UTR  Ftz-F1-related orphan receptor, LRH-1
 HCR00626 5'NCR  GATA-binding protein (GATA-3)
 HCR01598 3'UTR  G protein alpha subunit (Galphai3)
 HCR00414 3'UTR  GTP-binding protein (o-rab1, ypt1)
 HCR00162 3'UTR  GTP-binding protein Gq, alpha subunit 
 HCR00198 3'UTR  HBF-1 transcription factor, qin
 HCR00142 3'UTR  heat shock protein 108K, ERp99, GRP94, ppk 98, endoplasmin
 HCR01636 5'NCR  HOX 2.2
 HCR00180 5'UTR  HOX XlHbox1 protein (PR I type)
 HCR00239 3'UTR  HOX homeo box c8, NvHbox 1, HOX-3.3
 HCR00207 3'UTR  HOX homeobox protein (HOX1A, HOX-2.6) 
 HCR00276 5'NCR  HOX-2.9, Ghox-lab homeobox
 HCR00143 intron HOX3D, hox-3.4
 HCR00134 3'UTR  HOX-4.5, HOXd-10
 HCR00459 5'UTR  HOX-4.7, Ghox 4.7
 HCR00177 5'UTR  HOXa-4/HOX-1.4=HOXa-4
 HCR00209 3'UTR  HOX-8, MSX2 transcription factor
 HCR00182 3'UTR  HOX homeobox protein (HOXa11, GHOX1i)
 HCR00274 3'UTR  IkBa, pp40, MAD-3 encoding IkB-like activity
 HCR00206 5'UTR  Islet-1
 HCR00246 5'UTR  K-ras oncogene
 HCR00192 3'UTR  MAP kinase kinase (MEK1), ERK activator kinase
 HCR00254 3'UTR  MyoD1 homologue (mf1, CMD1)
 HCR01603 3'UTR  NF-IL6-beta protein, CCAAT/enhancer-binding protein delta=transcription factor CRP3
 HCR03954 5'UTR  POU-domain protein brain-2, Brn-2, XlPOU3, N-Oct 3
 HCR03949 3'UTR  Wnt-5B
 HCR01631 3'UTR  XLCL1, TB3-1
 HCR00160 3'UTR  Y-box protein YB2, transcription enhancer factor II
 HCR00848 5'UTR  YB-1 protein, YB3 protein
 HCR00106 5'UTR  acetylcholine receptor (mACHR)
 HCR00191 5'NCR  actin alpha skeletal 
 HCR01585 5'NCR  actin alpha-smooth muscle (aortic) 
 HCR00145 3'UTR  actin-capping protein (CapZ 36/32) alpha subunit
 HCR00205 3'UTR  actin-capping protein Z (cap-Z)
 HCR00270 3'UTR  agrin
 HCR00630 3'UTR  annexin II
 HCR00194 5'NCR  apolipoprotein A-I
 HCR00218 3'UTR  b-Zip protein MafF
 HCR01597 3'UTR  beta-ryanodine binding protein, ryanodine receptor
 HCR00166 5'UTR  bone morphogenetic protein-4 (BMP-4)
 HCR03957 3'UTR  c-Ha-ras oncogene
 HCR01594 5'NCR  c-jun proto oncogene (JUN)
 HCR03952 5'UTR  c-maf proto-oncogene
 HCR03943 3'UTR  c-myb proto-oncogene
 HCR03953 3'UTR  c-rel proto-oncogene
 HCR00212 3'UTR  cAMP-dependent protein kinase inhibitor
 HCR00228 3'UTR  calcitonin/CGRP gene exon 4
 HCR01582 5'NCR  calmodulin
 HCR00158 5'NCR  calmodulin II
 HCR01596 3'UTR  carbonic anhydrase II
 HCR01602 5'NCR  carbonic anhydrase II (CAII)
 HCR00129 3'UTR  casein kinase II alpha subunit
 HCR00233 3'UTR  catenin, alpha N-catenin, cadherin-associated protein-related (cap-r)
 HCR00173 3'UTR  catenin beta
 HCR00284 5'UTR  collagen alpha-I type III (COL3A1)
 HCR01635 5'NCR  collagen pro-alpha-2(I) 
 HCR00201 3'UTR  connexin 43, cardiac gap junction protein
 HCR00112 3'UTR  connexin-45
 HCR01593 3'UTR  corticotropin releasing factor
 HCR03930 5'NCR  creatine kinase B
 HCR00365 5'UTR  creatine transporter
 HCR03956 3'UTR  cyclin D2 (CCND2) 
 HCR00196 3'UTR  cytosolic adenylate kinase (AK1)
 HCR00271 5'NCR  embryonic/atrial myosin light chain
 HCR01600 3'UTR  engrailed protein (EN2)
 HCR00675 3'UTR  engrailed protein (En-1)
 HCR00147 5'NCR  estrogen receptor
 HCR00428 5'UTR  ferritin
 HCR01618 3'UTR  fibronectin receptor beta subunit, integrin beta subunit
 HCR00213 5'UTR  finger protein
 HCR00154 3'UTR  focal adhesion kinase
 HCR03951 3'UTR  fork head related protein (HNF-3beta), hepatocyte nuclear factor 3a
 HCR03945 3'UTR  gamma-aminobutyric-acid receptor alpha-subunit
 HCR00211 3'UTR  glutamine synthetase (Glns)
 HCR03942 3'UTR  glycine decarboxylase (P-protein)
 HCR00115 3'UTR  growth factor inducible immediate early gene cyr61, CEF-10
 HCR00294 5'UTR  hepatocyte nuclear factor (HNF-3B) 
 HCR00141 5'UTR  high density lipoprotein binding protein (HBP), vigilin
 HCR00159 3'UTR  high density lipoprotein binding protein (HBP), vigilin
 HCR00135 5'NCR  high endothelial venule, QR1
 HCR00195 5'NCR  high mobility group 1 (HMG1) protein
 HCR00193 3'UTR  histone
 HCR00187 5'NCR  histone H1
 HCR00386 5'NCR  histone H1 
 HCR01140 3'UTR  histone H4
 HCR00115 5'NCR  histone gene encoding replacement variant H3.3B
 HCR01599 3'UTR  inhibin beta-B subunit/Activin betaB
 HCR00148 3'UTR  insulin-like growth factor I, IGF-I
 HCR00223 3'UTR  kinase related protein
 HCR03944 3'UTR  laninin B2 (LAMB2), lamin B2, lamin LII
 HCR00167 3'UTR  lipoprotein lipase
 HCR00295 5'NCR  low density lipoprotein receptor (LDLR) 
 HCR00136 5'NCR  metallothionein B, A
 HCR01614 3'UTR  morphogen (sonic hedgehog)
 HCR00132 5'NCR  myogenin
 HCR03962 3'UTR  myogenin
 HCR03950 3'UTR  myosin light chain kinase skeletal muscle 
 HCR00156 3'UTR  neurotrophin-3 receptor (trkC) = tyrosine kinase C receptor
 HCR01588 5'UTR  nuclear factor I-A1, NFI-B
 HCR00172 3'UTR  nuclear factor NF90, dsRNA-binding protein 4F.2
 HCR01626 3'UTR  nuclear factor kappa B p105 subunit
 HCR00398 3'UTR  nucleolar protein No38 (B23), nucleophosmin
 HCR00144 3'UTR  nucleolin
 HCR01645 5'NCR  osteopontin
 HCR00243 5'UTR  ovalbumin upstream promoter transcription factor, steroid receptor homologue
 HCR01624 5'UTR  pax[zf-b], pax-2
 HCR00181 3'UTR  phosphatase 2A alpha subunit
 HCR00204 3'UTR  phosphatase 2A-beta catalytic subunit
 HCR00169 3'UTR  platelet-derived growth factor A chain (PDGFA) 
 HCR00315 3'UTR  poly(A) polymerase type 2
 HCR00224 5'UTR  pp40
 HCR00199 3'UTR  prolyl 4-hydroxylase alpha-subunit
 HCR00189 5'NCR  prolyl 4-hydroxylase beta-subunit
 HCR00821 3'UTR  proteasome subunit XC3
 HCR00240 3'UTR  protein disulphide isomerase
 HCR00349 3'UTR  restrictin, J1-160/180 neural recognition molecule
 HCR01605 3'UTR  retinoic acid receptor-beta, RAR-beta
 HCR00383 3'UTR  retinoid X receptor gamma
 HCR00168 3'UTR  ribonucleoprotein (elrA)
 HCR00346 5'NCR  ribosomal protein L30
 HCR00126 intron ribosomal protein L1a, L1h
 HCR00283 intron ribosomal protein L1a, L4 = U18 snoRNA
 HCR00118 intron ribosomal protein L30
 HCR00221 intron ribosomal protein L7a
 HCR00104 5'UTR  s-gicerin
 HCR00327 3'UTR  sarcoplasmic reticulum glycoprotein
 HCR00130 3'UTR  silencer element, SCG10
 HCR01601 3'UTR  smooth muscle myosin light chain kinase
 HCR00113 3'UTR  src substratep80/85 (cortactin), amplaxin (EMS1) 
 HCR00200 5'UTR  stem cell factor
 HCR01633 3'UTR  sulfate proteoglycan (HSPG), syndecan-2, fibroglycan
 HCR01664 3'UTR  tenascin, hexabrachion
 HCR00230 3'UTR  thyroid hormone receptor beta (c-erbA-beta)
 HCR00133 3'UTR  tissue inhibitor of metalloproteinases-3 (IMP-3, Timp-3)
 HCR03948 3'UTR  transcription factor (E2A), DNA binding protein E12
 HCR00146 3'UTR  translationally controlled tumor protein P21
 HCR01592 3'UTR  transmembrane protein
 HCR03959 3'UTR  tropoelastin
 HCR03955 3'UTR  tropomyosin alpha-chain skeletal muscle 
 HCR00235 intron tropomyosin alpha
 HCR00561 3'UTR  tubulin beta 5 
 HCR00174 3'UTR  tyrosine kinase (cek2), fibroblast growth factor receptor 3
 HCR01584 3'UTR  vascoactive intestinal polypeptide
 HCR03958 3'UTR  zinc finger protein (Sna), homologous to Drosophila Snail