;;ACUTS entry: ACTB_3UT ;;ACUTS accession number: CU00100 ;;# of segments=7 HCR310 ;; 41,64 111,137 197,285 291,360 399,444 527,585 709,782 ;;# of segments=5 HCR400 ;; 103,134 203,280 281,355 399,445 721,785 ;;@ of species = 5 MAMMALIA ;; 6, 7, 8, 9, 10 ;;@ of species = 1 SAUROPSIDA (BIRDS AND REPTILES) ;; 5 ;;@ of species = 4 ACTINOPTERYGII (BONY FISHES) ;; 1, 2, 3, 4 ;; saved by seaview on Wed Jun 26 15:56:54 1996 ;; saved by seaview on Wed Jun 26 15:21:48 1996 ;;Aligned by clustal on Wed Jun 26 14:32:39 1996 ;DEFINITION beta-actin [Oryzias latipes=medaka, Genomic, 4791 nt]. ;ACCESSION S74868 ; CDS join(2076..2198,2289..2529,2857..3295,3367..3548, ; 3632..3775) ; /note="Coding region intervals are assigned as authors ; indicated in the paper; Description: beta-actin" ; /codon_start=1 ; /partial ; /%(C+G)="CG<45%" ; /note="C+G content in third codon positions = 41.5 % " ; /redundancy_ref="RD044049" ; /gene_family="FAM000492" ;Extracting fragment E+1,E+5000 from above feature ACTB_3UT.1.ORYLA -ACAGACTTTCTCC--------TCCCCAGCCAAACACCCAACAACTTCAG-CTCTGTTCA AAAC---CACACCACACATTTCTCG--CTCACTCAGGCGCAGGGCCTAGACGACCAACTC ATTGGCATGGCTTCAGT------------------------------------------- ----------------------TATTTTTGGCGC--TTGACTCA-GGATTTTAAAAAAAA AACTGGAACAATGAAGGAGATAATGTTTTTGCTTTTTGGCTAGGTTTAAA-------CAC CCCAGGCATCTGCAGTTGCATCTGGGG-CTT----AAATGTACATTTTGTTCTTT----A AGTCATTCCAAATGTTTGTTGACTGCATCGTTCAAA--CATGATTCCAAATGTA----AA CTGCATTGTT-CAGACACGTATTTGCCTCTGTGAAGGCTGCCCAGT-------GGTTGA- -GCATACTTAAACATGGTTGTAGTAT-TGCTT--GTATGTAA----ATTTTGTCTGGGG- TTTTTTGTACT----TTCAGCCTTAAA----TCTTGGTCCTGTTCAAATTTTTTTCTTTT GTTATGCAAAACCCAACCA-TGACCTTCTT---CCCCCTGT----TGGAGGTT-CA---T CTCTGGGGAGGTGCGGTAAGGGGTCTTCATGACG---GGCGTAACATGGGGTGCCAGACC AGTGGGGCCAAACCTGTACACTGAC-T-AAACAATCCC-AATAAA-GTGCACATGTGTTC CGACTTGATGTCTGCATCTGTTTGGTCTCTTTATTTTTAAGCAGTAACACACTGAGTGAC TGCATCTGAAATCTGATCTTTACCAACTAGTGCAATTGGCAGTTTAAACAAGGATTTACA TCCACAATAAGTACCTATTAAAGCTTTTCCATTGATTCTTTAAAGCTTAAACCTTAGGTC ATACAAACTACAGGAGCACAAAATGAAAACTGCATTTACCTGAGGATTTATTGTGAATCC AGGGGTAATGAGAAGTGGCAGTTCAACTAAAGCTGTACAGTTTCAACTATTGAAGTTAAA CAGGAGGAAAGAGTGACTAAATACCCAATCGCTTTACAAAGAAACTTGTGGGTATAAAGC GGCAACCCAGCTCGGTCAAAAGCTTG---------------------------------- --------------------------------------------------- ;DEFINITION S.aurata mRNA for beta-actin protein. ;ACCESSION X89920 ;Extracting fragment 1129,E from above sequence ACTB_3UT.1.SPAAU --CAGACTGTTCCTCCTCCCCCTCCCCAACCAA-CGCCCAACAACTTCAG-CTCTGTGCA AAACAACCACACCACACATTTCTCATACACACTCAGGNGCNAG-CCTAGATGACCAACTC ATTGGGATGGCTTCAGT------------------------------------------- ----------------------TATTTTTGGCGC--TTGACTCA-GGATTTT---AAAAA AACTGGAACGATGAAGGATACCA-GTTAAATGTTTTTGNCTAGGTTTAAAAA---AGCAC CCCAGGGTTCTGCAGTTGCATCTGGGGACTTAAAAAAATGTACATTTTGTTTTTTCTTTG AGTCATTCCAAATGTTTGTTAACTGCATTGTTCAGATACATGATTCCAAATGTT----AA CTGCATTGTT-CAGACACGTATTCGCCTCTGTGAAGGCTGCCCAGT-------GGTTGGC -GCATACTTAAACATGGTTGTAGTAT-CGCTTT-GTATGTAA----ATTATGTCTGGG-- TTTTTTGTACT----TTCAGCCTTAAAAATATCTTGGTCCTGTT-AATTTTTTTGTTTTT GTTATGCAAAACCCAGTCG-TGACCTCTTCTTCCCCCCTGT----TGAAGGTTTCA---T CCCCGGGGTGGTGGGGCAAGGGGTCTCGAAGTGAT--GGGGTTACATGGGGTGCCAGACC GGTGGGGCCAA-CCTGTACACTGAC-TGAAACAATCCC-AATAAA-GTGCACATGTGTTC CGACATGAAAAAAAAAAA------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION Grass carp (C.idella) beta-actin gene, complete cds. ;ACCESSION M25013 ; 3'ncr 3327..4243 ; /cds_name="CTEACTBB.PE1 " ACTB_3UT.1.CTEID ACCGGACTGTTACCA-------CTTCACGCCG--------------ACTCAAACTGCGCA GAGA--------------------------------------AAAACTTCAAACGACAAC ATTGGCATGGCTTTTGT------------------------------------------- ----------------------TATTTT-GGCGC--TTGACTCA-GGATCT------AAA AACTGGAACGGTGAAGGTGACGGCAATGTTTTTTTGGCAAATAAGCATC----------- CCCGAAGTTCTACAA-TGCATCTGAGGACTCAA-----TGGTTTTTGTTTTGTTTCTTT- --------------------------------------AGTCATTCCAAATGTTTGTTAA ATGCATTGTT-CCGAAACTTATTTGCCTCTATGAAGGCTGCCCAGT-------AATTGGG AGCATACTTAA-CATTGTAGTATTGTATGTAAA-TTATGTAACAAAACAATGTCTGGG-- -TTTTTGTACT----TTCAGCCTTAAA---ATCTTGGGTTTTTTTTTTTTTTTTAATTTT TTTTCTTTGTTCCAAAAAACTAAGCTTTACCATTCAAGATG----TAAAGGTATCCATTC TCCCCCTGGCATATTGTAAAAGCTGTGTGGAACGT--GGCGGTGCAGACATT-------T GGTGGGGCCAA-CCTGTACACTGAC-TAATTCAAATCC-AATAAAAGTGCACATGTGTAA GACATCATATTCCTGTGTGACTTCCTGTGTTGGTGCTGAATGAACTTGAGTAGAAGGATA TTAGG------TTTAATAAAACTAGTCTT------GGGTTTTCTTAGTGTTGTATTCA-C ATTTTATTGAGTATGCCCTTTGGTTCCAGAGCACTTTGGTGTAAGATAAATGGGTTTTCT TGACCTGATTAAACTGGGTGTTGTAGGTGGCTTTAACAAACTCAAATATTTGCAATTTGA GATTAAAATGGTGTACATAGAAAATAACTTGCTCAAATGCTTTCAAATGATCAAACTAAC AAATCTGGCATTTTATCAAAATTATTTACATGTTTCCTTCATAAATGTAGCTTTTAATTG CCTTCACTGTTCACAT-------------------------------------------- --------------------------------------------------- ;DEFINITION Common carp (C.carpio) beta-actin gene, complete cds. ;ACCESSION M24113 ; 3'ncr 3299..3994 ; /cds_name="CYIACTBA.PE1 " ACTB_3UT.1.CYPCA A-CGGACTGTTACCA-------CTTCACGCCG--------------ACTC-AACTGCGCA GAGA--------------------------------------AAAACTTCAAACGACAAC ATTGGCATGGCTTTTGT------------------------------------------- ----------------------TATTTTTGGCGC--TTGACTCA-GGATCT------AAA AACTGGAACGGCGAAGGTGACGGCAATGTTTT---GGCAAATAAGCATC----------- CCCGAAGTTCTACAA-TGCATCTGAGGACTCAA-----TGTTTTTTTTTTTTTTTTTTCT TT------------------------------------AGTCATTCCAAATGTTTGTTAA ATGCATTGTT-CCGAAACTTATTTGCCTCTATGAAGGCTGCCCAGT-------AATTGGG AGCATACTTAA-CATTGTAGTATTGTATGTAAA-TTATGTAACAAAACAATGACTGGG-- -TTTTTGTACT----TTCAGCCTTAA-----TCTTGGGTTTTTTTTTTTTTTTG------ --------GTTCCAAAAAACTAAGCTTTACCATTCAAGATG----TAAAGGTTTCA---T TCCCCCTGGCATATTGAAAAAGCTGTGTGGAACGT--GGCGGTGCAGACATT-------T GGTGGGGCCAA-CCTGTACACTGAC-TAATTCA------AATAAAAGTGCACATGT--AA GACATCCTACTC-TGTGTGA-TTTTTCTGTTTGTGCTGAGTGAACTTGCTATGAAGTCTT TTAGTGCACTCTTTAATAAAAGTAGTCTTCCCTTAAAGTGTCCCTTCCCTTATGGCCTTC ACATTTCTCAACTAGCGCTTCAACTAGAAAGCACTTTAGGGACTGGGATGC--------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION Gallus gallus cytoplasmic beta-actin gene. ;ACCESSION X00182 ; 3'ncr 4176..5046 ; /cds_name="GGAC01.PE1 " ACTB_3UT.1.CHICK ACCGGACTGTTACCAACACCCAC---ACCCCTGTGATGAAACAAAACCCATAAATGCGCA TAAA----------------------------------------------ACAAGACGAG ATTGGCATGGCTTTATT------------------------------------------- ----------------TGTTTTTTCTTTTGGCGC--TTGACTCA-GGATTA------AAA AACTGGAATGGTGAAGGTGTCAGCAGCAGTCTTAAAATGAAACATGTTGGAGCGAACGCC CCCAAAGTTCTACAA-TGCATCTGAGGACTTTG---ATTGTACATTTGTTTCTTTTTTAA T-------------------------------------AGTCATTCCAAATATTGTTATA ATGCATTGTTACAGGAAGTTACTCGCCTCTGTGAAGGCAACAGCCC-------AGCTGGG AGGAGCCGGTACCAATTACTGGTGTTA----------GATGATA--ATTGCTTGTCTGTA AATTATGTAACCCAACAAGTGTCTTTTTGTATCTTCCGCCTTAAAAACAAAACA----CA CTTGATCCTTTTTGGTTTGTCAAGCAAGCGGGCTGTG---------TTCCCCAGTGATAG ATGTGAATGAAGGCTTTACAGTCCCCCACAGTCTAGGAGTAAAGTGCCAGTATGTGGGGG AGGGAGGGGCTACCTGTACACTGACTTAAGACCAGTTCAAATAAAAGTGCACACAA---- TAGAGGCTTGACTGGTGTTGGTTTTTATTTCTGTGCTGCGCTGCTTGGCCGTTGGTAGCT GTTCTCATCTAGCCTTGCCAGCCTGTGTGGGTCAGCTATCTGCATGGGCTGCGTGCTGGT GCTGTCTGGTGCAGAGGTTGGATAAACCGTGATGATATTTCAGCAAGTGGGAGTTGGCTC TGATTCCATCCTGAGCTGCCATCAGTGTGTTCTGAAGGAAGCTGTTGGATGAGGGTGGGC TGAGTGCTGGGGGACAGCTGGGCTCAGTGGGACTGCAGCTGTGCT--------------- ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION Human cytoplasmic beta-actin gene, complete cds. ;ACCESSION M10277 ; 3'ncr 3001..3646 ; /cds_name="HUMACCYBB.PE1 " ACTB_3UT.1.HUMAN -GCGGACTATGACTTAGTTGCGTT--ACACCCTTTCTT-GACAAAACCTA-ACTTGCGCA GAAA----------------------------------------------ACAAGATGAG ATTGGCATGGCTTTATT-----TGTTTTTTTTGTTTTGTTTTGGT--------------- --------------TTTTTTTTTTTTTTTGGC----TTGACTCA-GGATTT------AAA AACTGGAACGGTGAAGGTGACAGCAGTCGG-TTGGAGC-GAGCATCCCC----------- --CAAAGTTC-ACAA-TGTGGCCGAGGACTTTG---ATTG--CATTGTTGTTTTTTTAAT --------------------------------------AGTCATTCCAAATAT----GAG ATGCATTGTTACAGGAAGTCCCTTGCCATCCTAAAAGCCACCCCACTTCTCTCTAAGGAG AATGGCCCAGTCC-TCTCCCAAGTCCACACAGGG-GAGGTGATAGCATTGCTTTCGTGTA AATTATGTAAT----GCAAAATTTTTTTAA--TCTTCGCCTTAATACTTTTTTA----TT TTGTTTTATTT-TGAATGATGAGCCTTCGTGCCCCCCCT------TCCCCCTTTTTGTCC CCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGG--------GTGGAGGC AGCCAGGGCTTACCTGTACACTGACTTGAGACCAGTTG-AATAAAAGTGCACACCT---- TAAAAA-TGAGGCCAAGTGTGACTTTGTGGTGTGGCTGGGTTG--GGGGCAGCAGAGGGT G----------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION O.cuniculus mRNA for gamma-non muscle actin. ;ACCESSION X60733 ; 3'ncr 1204..1839 ; /cds_name="OCRNAGNMA.PE1 " ACTB_3UT.1.RABIT -GCGGACTGTTAGAGCCAGTGGCGGGACACCCTCTCTC-GACGAAACCTA-ACG-GCGCA GAAA-----------------------------------------------CGAGACGAG ATTGGCATGGCTTTATT-----CGTGTTTTTTTTTTTTTTCTTTT--------------- -------TTTGTTTTTTTTTTTTTGTTTTGGCGCTTTTGACTCA-GGATTT------AAA AACTGGAACGGTGAAGGTGACAGCAGTCG--TTGGAGC-GAGCATCCCCAAA-----GTC CCCAAAGTTCTGCAA-TGTGGCCGAGGACTTTG---ATTGTACATTGTTTTTTTTTTTTT CTTTTGAT------------------------------AGTCATTCCAAATAT------- -----------CGTGAGATGCCATGTGACGGAAGCCCCCGCCCCAC-TCCTGCCAAGGAG AAGCGCAGTCCTCGCCGCCCGGGGCCACCCAGGG-GAGGCGGCAGCATCGCATTTGTGTA AATTATGTAAT-----GCAAATTTTTTAAA--TCTTCGCCTTAATACTTTTTTTAA--TT TTCTTTTTATTTTGAATGGTCAGCCATCGTGGCCCC-----------CCCTTTTTTGTCC CCCAACTTGAGATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGGGTTGAGGTGTGGAGGC AGCCAGGGCTTCCCTGTACACTGAC--GAGACCAGTTC-AATAAAAGTGCACACCT---- GAACACAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION Mouse cytoskeletal mRNA for beta-actin. ;ACCESSION X03672 ; 3'ncr 1209..1892 ; /cds_name="MMACTBR.PE1 " ACTB_3UT.1.MOUSE -GCGGACTGTTACTGAGCTGCGTTTTACACCCTTTCTTTGACAAAACCTA-ACTTGCGCA GAAA------------------------------------AAAAAAAAATAAGAGACAAC ATTGGCATGGCTTTGTTTTTTTAAATTTTTTTTAAAGTTTTTTTTTTTTTTTTTTTTTTT -TTTTTTTTAAGTTTTTTTGTTTTGTTTTGGCGCTTTTGACTCA-GGATTT------AAA AACTGGAACGGTGAAGGCGACAGCAGTTGG-TTGGAGC-AAACATCCCC----------- --CAAAGTTCTACAAATGTGGCTGAGGACTTTG-------TACATTGTTTTGTTTTTTTT TTTTTTTGGTTTTGTCTTTTTTTAAT------------AGTCATTCCAAGTATCCATGAA ATAAGTGGTTACAGGAAGTCCCTCACCCTCCCAAAAGCCACCCCCA-CTCCTAAGAGGAG GATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGGTGACAGCATTGCTTCTGTGTA AATTATGTACT---GCAAAAATTTTTTTAAATCTTCCGCCTTAATACTTCATTT----TT GTTTTTAATTTCTGAATGGCCCAG-GTCTGAGGCCT---------CCCTTTTTTTTGTCC CCCCAACTT-GATGTATGAAGGCTTT-GGTCTCCCTGGGAGGGGGTTGAGGTGTTGAGGC AGCCAGGGCTGGCCTGTACACTGACTTGAGACC------AATAAAAGTGCACACCT---- TACCT--TACACAAAC-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION Rat gene encoding cytoplasmic beta-actin. ;ACCESSION V01217 J00691 ; 3'ncr 3135..4100 ; /cds_name="RNAC01.PE1 " ACTB_3UT.1.RAT -GCGGACTGTTACTGAGCTGCGTTTTACACCCTTTCTTTGACAAAACCTA-ACTTGCGCA GAAA----------------------------------------AAAAAAATGAGACA-- TTTGGCATGGCTTTATTGTTTTTTTGTTTTTTGTTTTTGTTTTTTTTAAATTTTTTTTTT AAAAAGGTTTTTTTTTTTTGTTTTGTTTTGGCGCTTTTGACTCAAGGATTT------AAA AACTGGAACGGTGAAGGCGACCGCAGTTGG-TTGGAGC-AAACATCCCC----------- --CAAAGTTCTACAA-TGTGGCTGAGGACTTTG---ATTGTACATTGTTTTTTGTTTTTG GT---------------TTTTTTAAT------------AGTCACTCCAAGTATCCACGGC ATAGATGGTTACAGGAAGTCCCTCACCCTCCCAAAAGCCACCCCCAACTCCTAAGGGGAG GATGGCTGCATCCATGCCCTGAGTCCACACCGGG-AAGGTGACAGCATTGCTTCTGTGTA AATTATGTACTT--GCAAACATTTTTTTAAATCTTCCGCCTTAATACTTCATTT----TT GTTTTTAATTTCTGAATGGTCAGCCATTCGTGGCCTGC-------CCCTTTTTTTTGTCC CCCCAACTT-GATGTATGAAGGCTTT-GGTCTCCCTGGGAGTGGTTTGAGGTGTTGAGGC -GCCAGGGCTGGCCTGTACACTGACGTGAGACCGTTTT-AATAAAAGTGCACACCT---- TAC-----AAACAAGTTTGTGGCTCTGTGGCTTCTACTGGGTG--TGGGGAGCAGGCTGG GTGGGTGTGNAACTCCACGTGGGGGAGGGGCAATTTAGGGTGGGCTGG-CCTTGCCTGAT AGCT---AGTGGGAGGGCTAAAGGATCATGATCTTTAATGAGGTCTCATAAATACCCCAC C--TTCGGTCTTGAGGGAGGGTGAGGAGTTGGGAAGGTATCTCCCTGACACCTGGCCAAG CTGGCCTCATCAACCCTACTTTCCTCAGCCAGGGGGAGGTCCACATCCTCCCACCTGCAT AGCTTGCGTCTAGAGGC------------------------------------------- ------------------------------------------------------------ --------------------------------------------------- ;DEFINITION Cricetulus griseus beta-actin (ACTB) gene, complete cds. ;ACCESSION U20114 ; 3'ncr 3118..4224 ; /cds_name="CGU20114.ACTB " ACTB_3UT.1.CRIGR -GCGGACTGTTACTGAGCTGTGTTTTACACCCTTTCTTTGACAAAACCTA-ACTTGCGCA GAAA-----------------------------------------AAAAAATGAGACAAC ATTGGCATGGCTTTGTTTTTTTGTTTTGTTTTTTTAATTTTTTTAAAAAAGGTTTTGTTT -------TTTTTTTTTTTTGTGTTGTTTTGGCGCTTTTGACTCA-GGATTT------AAA AACTGGAACGGTGAAGGCGACAGCAGTCGG-TTGGAGC-AAACATCCCC----------- --CAAAGTTCTACAA-TGTGGCTGAGGACTTTG---ATTGCACATTTTTTTTCTTTTTTA --------------------------------------AGTCATTCCAAGTACCCATG-- --AGATGGCTACAGGAAGTCCCTCACCCTCCCAAAAGCCATCCCCA-TTCCCTAGAAGAG GATGGCTGAGTCCATTCCCTGAGTCCACACCGGG-GAGGTGACAGCATTGCTTCTGTGTA AATTATGGACT---CCCAAAATTTTTTTAAATCTTCCGCCTTAAAACTTC--TT----TT GTTTTTAATTT-TGGATGGTCAACCATCGTGGCCCCTTTTTTTTTTTTTTTTTTTTGTCC CCCCAACTT-GATGTATGAAGGCTTTTGGTCTCCCTGGGAGTGGGTTGAGGTGTTGAGGC AGCCAGGGCTTGCCTGTACACTGACTTGAGACCAGTTT-AATAAA-GTGCACACCT---- TAC-----AAACAGTGCTGCTTGTTTGTGGCTTTGCTAGATTC--TGGGTAGCAGCGGGG GAGGGGGTCACTATTACCTTTGCTCCAAGAGGTTCTAGGGTGGTCTGGGCCTTGCCTAGT AGTTTTTAGTGGGAGGACACAAGCATCATGACCTTTAACCAGTTATCACAAATACCCTGT CCATTGAGTTCTGAAGTCTTAATTGTGTCTTGGTTGGAAGGGTGTCCATCCTGAATTGGG AATACCCCCTGGGCCAAGTTGGGTTCCTGCAGCAAACAACCCTGTAATCTCAACCTTCCT CTACCTTTGTGGGAAGCAGGAATCCTGTTGGGAGGGTAGCTTTACTGCCTTTGAGTTCTG CAAGACAGTGGGAAGTAAAAGCAGTCTCGGTTCTCTTGCTTTACCAGATACATGATCACA AAGTTTAAGGGTGTTAAGGCTCCCCAGGCATGGGTATCTTTCCCCGGTACC