bacteria {ade4} | R Documentation |
bacteria
is a list containing 43 species and genomic informations : codons, amino acid and bases.
data(bacteria)
This list contains the following objects:
is a factor with the amino acid names for each codon.
is a data frame 43 species 64 codons.
is a data frame 43 species 21 amino acid.
is a data frame 43 species 4 bases.
Data prepared by J. Lobry Jean.Lobry@univ-lyon1.fr
starting from:
http://www.tigr.org/tdb/mdb/mdbcomplete.html
data(bacteria) names(bacteria$espcodon) names(bacteria$espaa) names(bacteria$espbase) sum(bacteria$espcodon) # 22,619,749 codons if(adegraphicsLoaded()) { g <- scatter(dudi.coa(bacteria$espcodon, scann = FALSE), posi = "bottomleft") } else { scatter(dudi.coa(bacteria$espcodon, scann = FALSE), posi = "bottom") }