carni70 {ade4} | R Documentation |
This data set describes the phylogeny of 70 carnivora as reported by Diniz-Filho and Torres (2002). It also gives the geographic range size and body size corresponding to these 70 species.
data(carni70)
carni70
is a list containing the 2 following objects:
is a character string giving the phylogenetic tree in Newick format. Branch lengths are expressed as divergence times (millions of years)
is a data frame with 70 species and two traits: size (body size (kg)) ; range (geographic range size (km)).
Diniz-Filho, J. A. F., and N. M. Tôrres. (2002) Phylogenetic comparative methods and the geographic range size-body size relationship in new world terrestrial carnivora. Evolutionary Ecology, 16, 351–367.
## Not run: data(carni70) carni70.phy <- newick2phylog(carni70$tre) plot(carni70.phy) size <- scalewt(log(carni70$tab))[,1] names(size) <- row.names(carni70$tab) symbols.phylog(carni70.phy,size) orthogram(size, phylog = carni70.phy) yrange <- scalewt(carni70$tab[,2]) names(yrange) <- row.names(carni70$tab) symbols.phylog(carni70.phy,yrange) orthogram(yrange, phylog = carni70.phy) if(adegraphicsLoaded()) { g1 <- s.label(cbind.data.frame(size, yrange), plabel.cex = 0) g2 <- addhist(g1) } else { s.hist(cbind.data.frame(size, yrange), clabel = 0) } ## End(Not run)