meaudret {ade4} | R Documentation |
This data set contains information about sites, environmental variables and Ephemeroptera Species.
data(meaudret)
meaudret
is a list of 4 components.
is a data frame with 20 sites and 9 variables.
is a data frame with 20 sites and 13 Ephemeroptera Species.
is a data frame with 20 sites and 2 factors.
season
is a factor with 4 levels = seasons.
site
is a factor with 5 levels = sites along the Meaudret river.
is a character vector containing the names of the 13 species.
Data set equivalents to meau
: site (6) on the Bourne (a Meaudret affluent) and
oxygen concentration were removed.
Pegaz-Maucet, D. (1980) Impact d'une perturbation d'origine organique sur la dérive des macro-invertébérés benthiques d'un cours d'eau. Comparaison avec le benthos. Thèse de troisième cycle, Université Lyon 1, 130 p.
Thioulouse, J., Simier, M. and Chessel, D. (2004) Simultaneous analysis of a sequence of paired ecological tables. Ecology, 85, 1, 272–283.
data(meaudret) pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 4) pca2 <- bca(pca1, meaudret$design$season, scan = FALSE, nf = 2) if(adegraphicsLoaded()) { g1 <- s.class(pca1$li, meaudret$design$season, psub.text = "Principal Component Analysis", plot = FALSE) g2 <- s.class(pca2$ls, meaudret$design$season, psub.text = "Between dates Principal Component Analysis", plot = FALSE) g3 <- s.corcircle(pca1$co, plot = FALSE) g4 <- s.corcircle(pca2$as, plot = FALSE) G <- ADEgS(list(g1, g2, g3, g4), layout = c(2, 2)) } else { par(mfrow = c(2, 2)) s.class(pca1$li, meaudret$design$season, sub = "Principal Component Analysis") s.class(pca2$ls, meaudret$design$season, sub = "Between dates Principal Component Analysis") s.corcircle(pca1$co) s.corcircle(pca2$as) par(mfrow = c(1, 1)) }