njplot {ade4} | R Documentation |
This data set describes the phylogeny of 36 bacteria as reported by Perrière and Gouy (1996). It also gives the GC rate corresponding to these 36 species.
data(njplot)
njplot
is a list containing the 2 following objects:
is a character string giving the fission tree in Newick format.
is a numeric vector that gives the CG rate of the 36 species.
Data were obtained by Manolo Gouy manolo.gouy@univ-lyon1.fr
Perrière, G. and Gouy, M. (1996) WWW-Query : an on-line retrieval system for biological sequence banks. Biochimie, 78, 364–369.
data(njplot) njplot.phy <- newick2phylog(njplot$tre) par(mfrow = c(2,1)) tauxcg0 <- njplot$tauxcg - mean(njplot$tauxcg) symbols.phylog(njplot.phy, squares = tauxcg0) symbols.phylog(njplot.phy, circles = tauxcg0) par(mfrow = c(1,1))