suprow {ade4} | R Documentation |
This function performs a projection of supplementary rows (i.e. supplementary individuals).
## S3 method for class 'coa' suprow(x, Xsup, ...) ## S3 method for class 'dudi' suprow(x, Xsup, ...) ## S3 method for class 'dudi' predict(object, newdata, ...) ## S3 method for class 'pca' suprow(x, Xsup, ...) ## S3 method for class 'acm' suprow(x, Xsup, ...) ## S3 method for class 'mix' suprow(x, Xsup, ...)
x, object |
an object of class |
Xsup, newdata |
an array with the supplementary rows |
... |
further arguments passed to or from other methods |
If suprow.dudi
is used, the column vectors of Xsup are projected without prior modifications onto the principal components of dudi with the scalar product associated to the row weightings of dudi.
predict
returns a data frame containing the coordinates of the supplementary rows. suprow
returns a list with the transformed table Xsup
in tabsup
and the coordinates of the supplementary rows in lisup
.
Daniel Chessel
Anne B Dufour anne-beatrice.dufour@univ-lyon1.fr
Gower, J. C. (1967) Multivariate analysis and multivariate geometry. The statistician, 17, 13–28.
data(euro123) par(mfrow = c(2, 2)) w <- euro123[[2]] dudi1 <- dudi.pca(w, scal = FALSE, scan = FALSE) if(adegraphicsLoaded()) { g11 <- s.arrow(dudi1$c1, psub.text = "Classical", psub.posi = "bottomright", plot = FALSE) g12 <- s.label(suprow(dudi1, w)$tabsup, plab.cex = 0.75, plot = FALSE) g1 <- superpose(g11, g12) g21 <- s.arrow(dudi1$c1, psub.text = "Without centring", psub.posi = "bottomright", plot = FALSE) g22 <- s.label(suprow(dudi1, w)$tabsup, plab.cex = 0.75, plot = FALSE) g2 <- superpose(g21, g22) g3 <- triangle.label(w, plab.cex = 0.75, label = row.names(w), adjust = FALSE, plot = FALSE) g4 <- triangle.label(w, plab.cex = 0.75, label = row.names(w), adjust = TRUE, plot = FALSE) G <- ADEgS(list(g1, g2, g3, g4), layout = c(2, 2)) } else { s.arrow(dudi1$c1, sub = "Classical", possub = "bottomright", csub = 2.5) s.label(suprow(dudi1, w), add.plot = TRUE, clab = 0.75) s.arrow(dudi1$c1, sub = "Without centring", possub = "bottomright", csub = 2.5) s.label(suprow(dudi1, w), clab = 0.75, add.plot = TRUE) triangle.plot(w, clab = 0.75, label = row.names(w), scal = FALSE) triangle.plot(w, clab = 0.75, label = row.names(w), scal = TRUE) } data(rpjdl) rpjdl.coa <- dudi.coa(rpjdl$fau, scann = FALSE, nf = 4) rpjdl.coa$li[1:3, ] suprow(rpjdl.coa,rpjdl$fau[1:3, ])$lisup #the same data(deug) deug.dudi <- dudi.pca(df = deug$tab, center = deug$cent, scale = FALSE, scannf = FALSE) suprow(deug.dudi, deug$tab[1:3, ])$lisup #the supplementary individuals are centered deug.dudi$li[1:3, ] # the same