bpp::HmmEmissionProbabilities Member List

This is the complete list of members for bpp::HmmEmissionProbabilities, including all inherited members.

clone() const =0	bpp::HmmEmissionProbabilities	pure virtual
computeD2EmissionProbabilities(std::string &variable) const	bpp::HmmEmissionProbabilities	inlinevirtual
computeDEmissionProbabilities(std::string &variable) const	bpp::HmmEmissionProbabilities	inlinevirtual
getD2EmissionProbabilities(size_t pos) const	bpp::HmmEmissionProbabilities	inlinevirtual
getDEmissionProbabilities(size_t pos) const	bpp::HmmEmissionProbabilities	inlinevirtual
getHmmStateAlphabet() const =0	bpp::HmmEmissionProbabilities	pure virtual
getNamespace() const =0	bpp::Parametrizable	pure virtual
getNumberOfParameters() const =0	bpp::Parametrizable	pure virtual
getNumberOfPositions() const =0	bpp::HmmEmissionProbabilities	pure virtual
getParameter(const std::string &name) const =0	bpp::Parametrizable	pure virtual
getParameterNameWithoutNamespace(const std::string &name) const =0	bpp::Parametrizable	pure virtual
getParameters() const =0	bpp::Parametrizable	pure virtual
getParameters_()=0	bpp::Parametrizable	protectedpure virtual
getParameterValue(const std::string &name) const =0	bpp::Parametrizable	pure virtual
hasParameter(const std::string &name) const =0	bpp::Parametrizable	pure virtual
matchParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
operator()(size_t pos, size_t state) const =0	bpp::HmmEmissionProbabilities	pure virtual
operator()(size_t pos) const =0	bpp::HmmEmissionProbabilities	pure virtual
Parametrizable()	bpp::Parametrizable	inline
setAllParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
setHmmStateAlphabet(const HmmStateAlphabet *stateAlphabet)=0	bpp::HmmEmissionProbabilities	pure virtual
setNamespace(const std::string &prefix)=0	bpp::Parametrizable	pure virtual
setParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
setParameterValue(const std::string &name, double value)=0	bpp::Parametrizable	pure virtual
~Clonable()=default	bpp::Clonable	virtual
~Parametrizable()	bpp::Parametrizable	inlinevirtual