bpp::HmmTransitionMatrix Member List

This is the complete list of members for bpp::HmmTransitionMatrix, including all inherited members.

clone() const =0	bpp::Clonable	pure virtual
getEquilibriumFrequencies() const =0	bpp::HmmTransitionMatrix	pure virtual
getHmmStateAlphabet() const =0	bpp::HmmTransitionMatrix	pure virtual
getNamespace() const =0	bpp::Parametrizable	pure virtual
getNumberOfParameters() const =0	bpp::Parametrizable	pure virtual
getNumberOfStates() const =0	bpp::HmmTransitionMatrix	pure virtual
getParameter(const std::string &name) const =0	bpp::Parametrizable	pure virtual
getParameterNameWithoutNamespace(const std::string &name) const =0	bpp::Parametrizable	pure virtual
getParameters() const =0	bpp::Parametrizable	pure virtual
getParameters_()=0	bpp::Parametrizable	protectedpure virtual
getParameterValue(const std::string &name) const =0	bpp::Parametrizable	pure virtual
getPij() const =0	bpp::HmmTransitionMatrix	pure virtual
hasParameter(const std::string &name) const =0	bpp::Parametrizable	pure virtual
matchParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
Parametrizable()	bpp::Parametrizable	inline
Pij(size_t i, size_t j) const =0	bpp::HmmTransitionMatrix	pure virtual
setAllParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
setHmmStateAlphabet(const HmmStateAlphabet *stateAlphabet)=0	bpp::HmmTransitionMatrix	pure virtual
setNamespace(const std::string &prefix)=0	bpp::Parametrizable	pure virtual
setParametersValues(const ParameterList &parameters)=0	bpp::Parametrizable	pure virtual
setParameterValue(const std::string &name, double value)=0	bpp::Parametrizable	pure virtual
~Clonable()=default	bpp::Clonable	virtual
~Parametrizable()	bpp::Parametrizable	inlinevirtual