bpp-popgen
3.0.0
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This is the complete list of members for bpp::Group, including all inherited members.
addEmptyIndividual(const std::string &individual_id) | bpp::Group | |
addIndividual(const Individual &ind) | bpp::Group | |
addIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position, const Sequence &sequence) | bpp::Group | |
clear() | bpp::Group | |
deleteIndividualAtPosition(size_t individual_position) | bpp::Group | |
deleteIndividualById(const std::string &individual_id) | bpp::Group | |
deleteIndividualGenotype(size_t individual_position) | bpp::Group | |
deleteIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position) | bpp::Group | |
deleteIndividualSequenceByName(size_t individual_position, const std::string &sequence_name) | bpp::Group | |
getAlphabet() const | bpp::Group | |
getGroupId() const | bpp::Group | inline |
getGroupName() const | bpp::Group | inline |
getGroupSizeForLocus(size_t locus_position) const | bpp::Group | |
getGroupSizeForSequence(size_t sequence_position) const | bpp::Group | |
getIndividualAtPosition(size_t individual_position) const | bpp::Group | |
getIndividualById(const std::string &individual_id) const | bpp::Group | |
getIndividualCoordAtPosition(size_t individual_position) const | bpp::Group | |
getIndividualDateAtPosition(size_t individual_position) const | bpp::Group | |
getIndividualLocalityAtPosition(size_t individual_position) const | bpp::Group | |
getIndividualMonolocusGenotype(size_t individual_position, size_t locus_position) const | bpp::Group | |
getIndividualNumberOfSequences(size_t individual_position) const | bpp::Group | |
getIndividualPosition(const std::string &individual_id) const | bpp::Group | |
getIndividualSequenceAtPosition(size_t individual_position, size_t sequence_position) const | bpp::Group | |
getIndividualSequenceByName(size_t individual_position, const std::string &sequence_name) const | bpp::Group | |
getIndividualSequencePosition(size_t individual_position, const std::string &sequence_name) const | bpp::Group | |
getIndividualSequencesNames(size_t individual_position) const | bpp::Group | |
getIndividualSexAtPosition(size_t individual_position) const | bpp::Group | |
getMaxNumberOfSequences() const | bpp::Group | |
getNumberOfIndividuals() const | bpp::Group | |
Group(size_t group_id) | bpp::Group | |
Group(const Group &group) | bpp::Group | |
Group(const Group &group, size_t group_id) | bpp::Group | |
hasIndividualGenotype(size_t individual_position) const | bpp::Group | |
hasIndividualSequences(size_t individual_position) const | bpp::Group | |
hasSequenceData() const | bpp::Group | |
id_ | bpp::Group | protected |
individuals_ | bpp::Group | protected |
initIndividualGenotype(size_t individual_position, size_t loci_number) | bpp::Group | |
name_ | bpp::Group | protected |
operator=(const Group &group) | bpp::Group | |
removeIndividualAtPosition(size_t individual_position) | bpp::Group | |
removeIndividualById(const std::string &individual_id) | bpp::Group | |
setGroupId(size_t group_id) | bpp::Group | |
setGroupName(const std::string &group_name) | bpp::Group | |
setIndividualCoordAtPosition(size_t individual_position, const Point2D< double > &coord) | bpp::Group | |
setIndividualDateAtPosition(size_t individual_position, const Date &date) | bpp::Group | |
setIndividualGenotype(size_t individual_position, const MultilocusGenotype &genotype) | bpp::Group | |
setIndividualLocalityAtPosition(size_t individual_position, const Locality< double > *locality) | bpp::Group | |
setIndividualMonolocusGenotype(size_t individual_position, size_t locus_position, const MonolocusGenotype &monogen) | bpp::Group | |
setIndividualMonolocusGenotypeByAlleleId(size_t individual_position, size_t locus_position, const std::vector< std::string > &allele_id, const LocusInfo &locus_info) | bpp::Group | |
setIndividualMonolocusGenotypeByAlleleKey(size_t individual_position, size_t locus_position, const std::vector< size_t > &allele_keys) | bpp::Group | |
setIndividualSequences(size_t individual_position, const MapSequenceContainer &msc) | bpp::Group | |
setIndividualSexAtPosition(size_t individual_position, const unsigned short sex) | bpp::Group | |
~Group() | bpp::Group |