bpp-popgen  3.0.0
bpp::MultilocusGenotypeStatistics Member List

This is the complete list of members for bpp::MultilocusGenotypeStatistics, including all inherited members.

countBiAllelicForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
countGametesForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
countHeterozygousForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
countNonMissingForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesFis(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesFit(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesFrqForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesFst(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesFstats(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesIdsForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getAllelesMapForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getDistanceMatrix(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, const std::set< size_t > &groups, std::string distance_method)bpp::MultilocusGenotypeStatisticsstatic
getDnei72(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, size_t grp1, size_t grp2)bpp::MultilocusGenotypeStatisticsstatic
getDnei78(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, size_t grp1, size_t grp2)bpp::MultilocusGenotypeStatisticsstatic
getHeterozygousFrqForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getHexpForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getHnbForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getHobsForGroups(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getRHMultilocusFst(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getVarianceComponents(const PolymorphismMultiGContainer &pmgc, size_t locus_position, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getWCMultilocusFis(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getWCMultilocusFisAndPerm(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, std::set< size_t > groups, int nb_perm)bpp::MultilocusGenotypeStatisticsstatic
getWCMultilocusFst(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, const std::set< size_t > &groups)bpp::MultilocusGenotypeStatisticsstatic
getWCMultilocusFstAndPerm(const PolymorphismMultiGContainer &pmgc, std::vector< size_t > locus_positions, std::set< size_t > groups, int nb_perm)bpp::MultilocusGenotypeStatisticsstatic