bpp::BlockMergerMafIterator Member List

This is the complete list of members for bpp::BlockMergerMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)	bpp::AbstractFilterMafIterator	inline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
AbstractMafIterator()	bpp::AbstractMafIterator	inline
addIterationListener(IterationListener *listener)	bpp::AbstractMafIterator	inlinevirtual
analyseCurrentBlock_()	bpp::BlockMergerMafIterator	privatevirtual
BlockMergerMafIterator(MafIterator *iterator, const std::vector< std::string > &species, unsigned int maxDist=0, bool renameChimericChromosomes=false)	bpp::BlockMergerMafIterator	inline
BlockMergerMafIterator(const BlockMergerMafIterator &iterator)	bpp::BlockMergerMafIterator	inlineprivate
chimericChromosomeCounts_	bpp::BlockMergerMafIterator	private
currentBlock_	bpp::AbstractFilterMafIterator	protected
fireIterationMoveSignal_(const MafBlock &currentBlock)	bpp::AbstractMafIterator	protectedvirtual
fireIterationStartSignal_()	bpp::AbstractMafIterator	protectedvirtual
fireIterationStopSignal_()	bpp::AbstractMafIterator	protectedvirtual
ignoreChromosome(const std::string &chr)	bpp::BlockMergerMafIterator	inline
ignoreChrs_	bpp::BlockMergerMafIterator	private
incomingBlock_	bpp::BlockMergerMafIterator	private
isVerbose() const	bpp::AbstractMafIterator	inlinevirtual
iterationListeners_	bpp::AbstractMafIterator	protected
iterator_	bpp::AbstractFilterMafIterator	protected
logstream_	bpp::AbstractFilterMafIterator	protected
maxDist_	bpp::BlockMergerMafIterator	private
nextBlock()	bpp::AbstractMafIterator	inlinevirtual
operator=(const BlockMergerMafIterator &iterator)	bpp::BlockMergerMafIterator	inlineprivate
renameChimericChromosomes_	bpp::BlockMergerMafIterator	private
setLogStream(std::shared_ptr< OutputStream > logstream)	bpp::AbstractFilterMafIterator	inline
setVerbose(bool yn)	bpp::AbstractMafIterator	inlinevirtual
species_	bpp::BlockMergerMafIterator	private
started_	bpp::AbstractMafIterator	protected
verbose_	bpp::AbstractMafIterator	protected
~AbstractMafIterator()	bpp::AbstractMafIterator	inlinevirtual
~MafIterator()	bpp::MafIterator	inlinevirtual