bpp-seq-omics  2.4.1
bpp::MaskFilterMafIterator Member List

This is the complete list of members for bpp::MaskFilterMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)bpp::AbstractFilterMafIteratorinline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)bpp::AbstractFilterMafIteratorinlineprivate
AbstractMafIterator()bpp::AbstractMafIteratorinline
addIterationListener(IterationListener *listener)bpp::AbstractMafIteratorinlinevirtual
analyseCurrentBlock_()bpp::MaskFilterMafIteratorprivatevirtual
blockBuffer_bpp::MaskFilterMafIteratorprivate
currentBlock_bpp::AbstractFilterMafIteratorprotected
fireIterationMoveSignal_(const MafBlock &currentBlock)bpp::AbstractMafIteratorprotectedvirtual
fireIterationStartSignal_()bpp::AbstractMafIteratorprotectedvirtual
fireIterationStopSignal_()bpp::AbstractMafIteratorprotectedvirtual
isVerbose() constbpp::AbstractMafIteratorinlinevirtual
iterationListeners_bpp::AbstractMafIteratorprotected
iterator_bpp::AbstractFilterMafIteratorprotected
keepTrashedBlocks_bpp::MaskFilterMafIteratorprivate
logstream_bpp::AbstractFilterMafIteratorprotected
MaskFilterMafIterator(MafIterator *iterator, const std::vector< std::string > &species, unsigned int windowSize, unsigned int step, unsigned int maxMasked, bool keepTrashedBlocks)bpp::MaskFilterMafIteratorinline
maxMasked_bpp::MaskFilterMafIteratorprivate
nextBlock()bpp::AbstractMafIteratorinlinevirtual
nextRemovedBlock()bpp::MaskFilterMafIteratorinlinevirtual
operator=(const AbstractFilterMafIterator &it)bpp::AbstractFilterMafIteratorinlineprivate
setLogStream(std::shared_ptr< OutputStream > logstream)bpp::AbstractFilterMafIteratorinline
setVerbose(bool yn)bpp::AbstractMafIteratorinlinevirtual
species_bpp::MaskFilterMafIteratorprivate
started_bpp::AbstractMafIteratorprotected
step_bpp::MaskFilterMafIteratorprivate
trashBuffer_bpp::MaskFilterMafIteratorprivate
verbose_bpp::AbstractMafIteratorprotected
window_bpp::MaskFilterMafIteratorprivate
windowSize_bpp::MaskFilterMafIteratorprivate
~AbstractMafIterator()bpp::AbstractMafIteratorinlinevirtual
~MafIterator()bpp::MafIteratorinlinevirtual
~MafTrashIterator()bpp::MafTrashIteratorinlinevirtual