bpp::MsmcOutputMafIterator Member List

This is the complete list of members for bpp::MsmcOutputMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)	bpp::AbstractFilterMafIterator	inline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)	bpp::AbstractFilterMafIterator	inlineprivate
AbstractMafIterator()	bpp::AbstractMafIterator	inline
addIterationListener(IterationListener *listener)	bpp::AbstractMafIterator	inlinevirtual
analyseCurrentBlock_()	bpp::MsmcOutputMafIterator	inlinevirtual
currentBlock_	bpp::AbstractFilterMafIterator	protected
currentChr_	bpp::MsmcOutputMafIterator	private
fireIterationMoveSignal_(const MafBlock &currentBlock)	bpp::AbstractMafIterator	protectedvirtual
fireIterationStartSignal_()	bpp::AbstractMafIterator	protectedvirtual
fireIterationStopSignal_()	bpp::AbstractMafIterator	protectedvirtual
isVerbose() const	bpp::AbstractMafIterator	inlinevirtual
iterationListeners_	bpp::AbstractMafIterator	protected
iterator_	bpp::AbstractFilterMafIterator	protected
lastPosition_	bpp::MsmcOutputMafIterator	private
logstream_	bpp::AbstractFilterMafIterator	protected
MsmcOutputMafIterator(MafIterator *iterator, std::ostream *out, const std::vector< std::string > &species, const std::string &reference)	bpp::MsmcOutputMafIterator	inline
MsmcOutputMafIterator(const MsmcOutputMafIterator &iterator)	bpp::MsmcOutputMafIterator	inlineprivate
nbOfCalledSites_	bpp::MsmcOutputMafIterator	private
nextBlock()	bpp::AbstractMafIterator	inlinevirtual
operator=(const MsmcOutputMafIterator &iterator)	bpp::MsmcOutputMafIterator	inlineprivate
output_	bpp::MsmcOutputMafIterator	private
refSpecies_	bpp::MsmcOutputMafIterator	private
setLogStream(std::shared_ptr< OutputStream > logstream)	bpp::AbstractFilterMafIterator	inline
setVerbose(bool yn)	bpp::AbstractMafIterator	inlinevirtual
species_	bpp::MsmcOutputMafIterator	private
started_	bpp::AbstractMafIterator	protected
verbose_	bpp::AbstractMafIterator	protected
writeBlock_(std::ostream &out, const MafBlock &block)	bpp::MsmcOutputMafIterator	private
~AbstractMafIterator()	bpp::AbstractMafIterator	inlinevirtual
~MafIterator()	bpp::MafIterator	inlinevirtual