bpp-seq-omics  2.4.1
bpp::SequenceFilterMafIterator Member List

This is the complete list of members for bpp::SequenceFilterMafIterator, including all inherited members.

AbstractFilterMafIterator(MafIterator *iterator)bpp::AbstractFilterMafIteratorinline
AbstractFilterMafIterator(const AbstractFilterMafIterator &it)bpp::AbstractFilterMafIteratorinlineprivate
AbstractMafIterator()bpp::AbstractMafIteratorinline
addIterationListener(IterationListener *listener)bpp::AbstractMafIteratorinlinevirtual
analyseCurrentBlock_()bpp::SequenceFilterMafIteratorprivatevirtual
currentBlock_bpp::AbstractFilterMafIteratorprotected
fireIterationMoveSignal_(const MafBlock &currentBlock)bpp::AbstractMafIteratorprotectedvirtual
fireIterationStartSignal_()bpp::AbstractMafIteratorprotectedvirtual
fireIterationStopSignal_()bpp::AbstractMafIteratorprotectedvirtual
isVerbose() constbpp::AbstractMafIteratorinlinevirtual
iterationListeners_bpp::AbstractMafIteratorprotected
iterator_bpp::AbstractFilterMafIteratorprotected
keep_bpp::SequenceFilterMafIteratorprivate
logstream_bpp::AbstractFilterMafIteratorprotected
nextBlock()bpp::AbstractMafIteratorinlinevirtual
operator=(const SequenceFilterMafIterator &iterator)bpp::SequenceFilterMafIteratorinlineprivate
rmDuplicates_bpp::SequenceFilterMafIteratorprivate
SequenceFilterMafIterator(MafIterator *iterator, const std::vector< std::string > &species, bool strict=false, bool keep=false, bool rmDuplicates=false)bpp::SequenceFilterMafIteratorinline
SequenceFilterMafIterator(const SequenceFilterMafIterator &iterator)bpp::SequenceFilterMafIteratorinlineprivate
setLogStream(std::shared_ptr< OutputStream > logstream)bpp::AbstractFilterMafIteratorinline
setVerbose(bool yn)bpp::AbstractMafIteratorinlinevirtual
species_bpp::SequenceFilterMafIteratorprivate
started_bpp::AbstractMafIteratorprotected
strict_bpp::SequenceFilterMafIteratorprivate
verbose_bpp::AbstractMafIteratorprotected
~AbstractMafIterator()bpp::AbstractMafIteratorinlinevirtual
~MafIterator()bpp::MafIteratorinlinevirtual