bpp::AbstractCoreSite Member List

This is the complete list of members for bpp::AbstractCoreSite, including all inherited members.

AbstractCoreSite()	bpp::AbstractCoreSite	inline
AbstractCoreSite(int coordinate)	bpp::AbstractCoreSite	inline
AbstractCoreSite(const CoreSiteInterface &site)	bpp::AbstractCoreSite	inline
AbstractCoreSite(const AbstractCoreSite &site)	bpp::AbstractCoreSite	inline
alphabet() const =0	bpp::CruxSymbolListInterface	pure virtual
clone() const override=0	bpp::CoreSiteInterface	pure virtual
coordinate_	bpp::AbstractCoreSite	private
deleteElement(size_t pos)=0	bpp::CruxSymbolListInterface	pure virtual
deleteElements(size_t pos, size_t len)=0	bpp::CruxSymbolListInterface	pure virtual
getAlphabet() const =0	bpp::CruxSymbolListInterface	pure virtual
getCoordinate() const override	bpp::AbstractCoreSite	inlinevirtual
getStateValueAt(size_t sequencePosition, int state) const override=0	bpp::CoreSiteInterface	pure virtual
operator()(size_t position, int state) const =0	bpp::CruxSymbolListInterface	pure virtual
operator=(const CoreSiteInterface &site)	bpp::AbstractCoreSite	inline
operator=(const AbstractCoreSite &site)	bpp::AbstractCoreSite	inline
setCoordinate(int coordinate) override	bpp::AbstractCoreSite	inlinevirtual
shuffle()=0	bpp::CruxSymbolListInterface	pure virtual
size() const =0	bpp::CruxSymbolListInterface	pure virtual
toString() const =0	bpp::CruxSymbolListInterface	pure virtual
~AbstractCoreSite()	bpp::AbstractCoreSite	inlinevirtual
~Clonable()=default	bpp::Clonable	virtual
~CoreSiteInterface()	bpp::CoreSiteInterface	inlinevirtual
~CruxSymbolListInterface()	bpp::CruxSymbolListInterface	inlinevirtual