bpp-seq3  3.0.0
bpp::AbstractSequenceSymbolList< T > Member List

This is the complete list of members for bpp::AbstractSequenceSymbolList< T >, including all inherited members.

addElement(const T &v)bpp::SymbolList< T >inlinevirtual
addElement(size_t pos, const T &v)bpp::SymbolList< T >inlinevirtual
alphabet_bpp::SymbolList< T >private
clearComments()=0bpp::CoreSequencepure virtual
clone() const =0bpp::AbstractSequenceSymbolList< T >pure virtual
content_bpp::SymbolList< T >protected
CoreSequence()bpp::CoreSequenceinline
deleteElement(size_t pos)bpp::SymbolList< T >inlinevirtual
deleteElements(size_t pos, size_t len)bpp::SymbolList< T >inlinevirtual
getAlphabet() constbpp::SymbolList< T >inlinevirtual
getComments() const =0bpp::CoreSequencepure virtual
getContent() constbpp::SymbolList< T >inlinevirtual
getElement(size_t pos) constbpp::SymbolList< T >inlinevirtual
getName() const =0bpp::CoreSequencepure virtual
getStateValueAt(size_t siteIndex, int state) constbpp::CruxSymbolListinlinevirtual
getValue(size_t pos) constbpp::SymbolList< T >inlinevirtual
operator()(size_t siteIndex, int state) constbpp::CruxSymbolListinlinevirtual
operator=(const CoreSymbolList< T > &list)bpp::SymbolList< T >inline
operator=(const SymbolList< T > &list)bpp::SymbolList< T >inline
operator[](size_t pos) constbpp::SymbolList< T >inlinevirtual
operator[](size_t pos)bpp::SymbolList< T >inlinevirtual
setComments(const Comments &comments)=0bpp::CoreSequencepure virtual
setContent(const std::vector< T > &list)bpp::SymbolList< T >inlinevirtual
setElement(size_t pos, const T &v)bpp::SymbolList< T >inlinevirtual
setName(const std::string &name)=0bpp::CoreSequencepure virtual
setToSizeL(size_t newSize)=0bpp::CoreSequencepure virtual
setToSizeR(size_t newSize)=0bpp::CoreSequencepure virtual
shuffle()bpp::SymbolList< T >inlinevirtual
size() constbpp::SymbolList< T >inlinevirtual
SymbolList(const Alphabet *alpha)bpp::SymbolList< T >inline
SymbolList(const std::vector< T > &list, const Alphabet *alpha)bpp::SymbolList< T >inline
SymbolList(const SymbolList< T > &list)bpp::SymbolList< T >inline
SymbolList(const CoreSymbolList< T > &list)bpp::SymbolList< T >inline
toString() constbpp::SymbolList< T >inlinevirtual
~AbstractSequenceSymbolList()bpp::AbstractSequenceSymbolList< T >inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~CoreSequence()bpp::CoreSequenceinlinevirtual
~CoreSequenceSymbolList()bpp::CoreSequenceSymbolList< T >inlinevirtual
~CoreSymbolList()bpp::CoreSymbolList< T >inlinevirtual
~CruxSymbolList()bpp::CruxSymbolListinlinevirtual
~SymbolList()bpp::SymbolList< T >inlinevirtual