bpp-seq3  3.0.0
bpp::AlignedValuesContainer Member List

This is the complete list of members for bpp::AlignedValuesContainer, including all inherited members.

AlignedValuesContainer()bpp::AlignedValuesContainerinline
clear()=0bpp::SequencedValuesContainerpure virtual
clone() const =0bpp::AlignedValuesContainerpure virtual
createEmptyContainer() const =0bpp::SequencedValuesContainerpure virtual
deleteGeneralComments()=0bpp::SequencedValuesContainerpure virtual
deleteSites(size_t siteIndex, size_t length)=0bpp::AlignedValuesContainerpure virtual
getAlphabet() const =0bpp::SequencedValuesContainerpure virtual
getComments(size_t sequenceIndex) const =0bpp::OrderedValuesContainerpure virtual
getComments(const std::string &name) const=0bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::getComments(const std::string &name) const =0bpp::SequencedValuesContainerpure virtual
getGeneralComments() const =0bpp::SequencedValuesContainerpure virtual
getName(size_t sequenceIndex) const =0bpp::OrderedValuesContainerpure virtual
getNumberOfSequences() const =0bpp::SequencedValuesContainerpure virtual
getNumberOfSites() const =0bpp::AlignedValuesContainerpure virtual
getSequenceNames() const =0bpp::SequencedValuesContainerpure virtual
getSequencePosition(const std::string &name) const =0bpp::OrderedValuesContainerpure virtual
getSitePositions() const =0bpp::AlignedValuesContainerpure virtual
getStateValueAt(size_t siteIndex, size_t sequenceIndex, int state) const =0bpp::OrderedValuesContainerpure virtual
getStateValueAt(size_t siteIndex, const std::string &sequenceName, int state) const=0bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::getStateValueAt(size_t siteIndex, const std::string &sequenceName, int state) const =0bpp::SequencedValuesContainerpure virtual
getSymbolListSite(size_t siteIndex) const =0bpp::AlignedValuesContainerpure virtual
getSymbolListSite(size_t siteIndex)=0bpp::AlignedValuesContainerpure virtual
hasSequence(const std::string &name) const =0bpp::SequencedValuesContainerpure virtual
operator()(size_t siteIndex, size_t sequenceIndex, int state) const =0bpp::OrderedValuesContainerpure virtual
bpp::SequencedValuesContainer::operator()(size_t siteIndex, const std::string &sequenceName, int state) const =0bpp::SequencedValuesContainerpure virtual
OrderedValuesContainer()bpp::OrderedValuesContainerinline
reindexSites()=0bpp::AlignedValuesContainerpure virtual
setComments(size_t sequenceIndex, const Comments &comments)=0bpp::OrderedValuesContainerpure virtual
setComments(const std::string &name, const Comments &comments)=0bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::setComments(const std::string &name, const Comments &comments)=0bpp::SequencedValuesContainerpure virtual
setGeneralComments(const Comments &comments)=0bpp::SequencedValuesContainerpure virtual
setSequenceNames(const std::vector< std::string > &names, bool checkNames)=0bpp::SequencedValuesContainerpure virtual
setSitePositions(Vint vPositions)=0bpp::AlignedValuesContainerpure virtual
toString(size_t sequenceIndex) const =0bpp::OrderedValuesContainerpure virtual
toString(const std::string &name) const=0bpp::OrderedValuesContainer
bpp::SequencedValuesContainer::toString(const std::string &name) const =0bpp::SequencedValuesContainerpure virtual
~AlignedValuesContainer()bpp::AlignedValuesContainerinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~OrderedValuesContainer()bpp::OrderedValuesContainerinlinevirtual