bpp-seq3  3.0.0
bpp::CoreSequenceSymbolList< T > Member List

This is the complete list of members for bpp::CoreSequenceSymbolList< T >, including all inherited members.

addElement(const T &c)=0bpp::CoreSymbolList< T >pure virtual
addElement(size_t pos, const T &c)=0bpp::CoreSymbolList< T >pure virtual
clearComments()=0bpp::CoreSequencepure virtual
clone() const =0bpp::CoreSequenceSymbolList< T >pure virtual
CoreSequence()bpp::CoreSequenceinline
deleteElement(size_t pos)=0bpp::CruxSymbolListpure virtual
deleteElements(size_t pos, size_t len)=0bpp::CruxSymbolListpure virtual
getAlphabet() const =0bpp::CruxSymbolListpure virtual
getComments() const =0bpp::CoreSequencepure virtual
getContent() const =0bpp::CoreSymbolList< T >pure virtual
getElement(size_t pos) const =0bpp::CoreSymbolList< T >pure virtual
getName() const =0bpp::CoreSequencepure virtual
getStateValueAt(size_t siteIndex, int state) constbpp::CruxSymbolListinlinevirtual
getValue(size_t pos) const =0bpp::CoreSymbolList< T >pure virtual
operator()(size_t siteIndex, int state) constbpp::CruxSymbolListinlinevirtual
operator[](size_t pos) const =0bpp::CoreSymbolList< T >pure virtual
operator[](size_t pos)=0bpp::CoreSymbolList< T >pure virtual
setComments(const Comments &comments)=0bpp::CoreSequencepure virtual
setContent(const std::vector< T > &list)=0bpp::CoreSymbolList< T >pure virtual
setElement(size_t pos, const T &c)=0bpp::CoreSymbolList< T >pure virtual
setName(const std::string &name)=0bpp::CoreSequencepure virtual
setToSizeL(size_t newSize)=0bpp::CoreSequencepure virtual
setToSizeR(size_t newSize)=0bpp::CoreSequencepure virtual
shuffle()=0bpp::CruxSymbolListpure virtual
size() const =0bpp::CruxSymbolListpure virtual
toString() const =0bpp::CruxSymbolListpure virtual
~Clonable()=defaultbpp::Clonablevirtual
~CoreSequence()bpp::CoreSequenceinlinevirtual
~CoreSequenceSymbolList()bpp::CoreSequenceSymbolList< T >inlinevirtual
~CoreSymbolList()bpp::CoreSymbolList< T >inlinevirtual
~CruxSymbolList()bpp::CruxSymbolListinlinevirtual