bpp-seq3  3.0.0
bpp::DCSE Member List

This is the complete list of members for bpp::DCSE, including all inherited members.

AbstractIAlignment()bpp::AbstractIAlignmentinline
AbstractIAlignment2()bpp::AbstractIAlignment2inline
appendAlignmentFromFile(const std::string &path, SequenceContainerInterface &sc) constbpp::AbstractIAlignmentinlineprotectedvirtual
appendAlignmentFromStream(std::istream &input, SequenceContainerInterface &sc) const overridebpp::DCSEvirtual
DCSE()bpp::DCSEinline
getDataType() constbpp::IOSequenceinlinevirtual
getFormatDescription() const overridebpp::DCSEvirtual
getFormatName() const overridebpp::DCSEvirtual
IAlignment()bpp::IAlignmentinline
IOFormat()bpp::IOFormat
IOSequence()bpp::IOSequenceinline
ISequence()bpp::ISequenceinline
readAlignment(std::istream &input, SequenceContainerInterface &sc) const overridebpp::AbstractIAlignmentinlinevirtual
readAlignment(const std::string &path, SequenceContainerInterface &sc) const overridebpp::AbstractIAlignmentinlinevirtual
readAlignment(const std::string &path, std::shared_ptr< const Alphabet > alpha) const overridebpp::AbstractIAlignmentinlinevirtual
readAlignment(std::istream &input, std::shared_ptr< const Alphabet > alpha) const overridebpp::AbstractIAlignmentinlinevirtual
readAlignmentFromFile(const std::string &path, std::shared_ptr< const Alphabet > alpha) constbpp::AbstractIAlignmentinlineprotectedvirtual
readAlignmentFromStream(std::istream &input, std::shared_ptr< const Alphabet > alpha) constbpp::AbstractIAlignmentinlineprotectedvirtual
readSequences(std::istream &input, std::shared_ptr< const Alphabet > alpha) const overridebpp::DCSEinlinevirtual
readSequences(const std::string &path, std::shared_ptr< const Alphabet > alpha) const overridebpp::DCSEinlinevirtual
bpp::AbstractIAlignment2::readSequences(std::istream &input, SequenceContainerInterface &sc) const overridebpp::AbstractIAlignment2inlinevirtual
bpp::AbstractIAlignment2::readSequences(const std::string &path, SequenceContainerInterface &sc) const overridebpp::AbstractIAlignment2inlinevirtual
~AbstractIAlignment()bpp::AbstractIAlignmentinlinevirtual
~AbstractIAlignment2()bpp::AbstractIAlignment2inlinevirtual
~DCSE()bpp::DCSEinlinevirtual
~IAlignment()bpp::IAlignmentinlinevirtual
~IOFormat()bpp::IOFormatvirtual
~IOSequence()bpp::IOSequenceinlinevirtual
~ISequence()bpp::ISequenceinlinevirtual