bpp-seq3  3.0.0
bpp::EdSymbolList< T > Member List

This is the complete list of members for bpp::EdSymbolList< T >, including all inherited members.

addCoreSymbolListListener(CoreSymbolListListener< T > *listener)bpp::EdSymbolList< T >inlinevirtual
addElement(const T &v)bpp::EdSymbolList< T >inlinevirtual
addElement(size_t pos, const T &v)bpp::EdSymbolList< T >inlinevirtual
afterSequenceChanged(const CoreSymbolListEditionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
afterSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
afterSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
afterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
alphabet_bpp::SymbolList< T >private
beforeSequenceChanged(const CoreSymbolListEditionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
beforeSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
beforeSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
beforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
clone() constbpp::EdSymbolList< T >inlineprotectedvirtual
content_bpp::SymbolList< T >protected
deleteElement(size_t pos)bpp::EdSymbolList< T >inlinevirtual
deleteElements(size_t pos, size_t len)bpp::EdSymbolList< T >inlinevirtual
EdSymbolList(const Alphabet *alpha)bpp::EdSymbolList< T >inlineprotected
EdSymbolList(const std::vector< T > &list, const Alphabet *alpha)bpp::EdSymbolList< T >inlineprotected
EdSymbolList(const CoreSymbolList< T > &list)bpp::EdSymbolList< T >inlineprotected
EdSymbolList(const EdSymbolList< T > &list)bpp::EdSymbolList< T >inlineprotected
fireAfterSequenceChanged(const CoreSymbolListEditionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireAfterSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireAfterSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireAfterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireBeforeSequenceChanged(const CoreSymbolListEditionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireBeforeSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireBeforeSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
fireBeforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)bpp::EdSymbolList< T >inlineprotectedvirtual
getAlphabet() constbpp::SymbolList< T >inlinevirtual
getContent() constbpp::SymbolList< T >inlinevirtual
getElement(size_t pos) constbpp::SymbolList< T >inlinevirtual
getListener(size_t i) constbpp::EdSymbolList< T >inlinevirtual
getListener(size_t i)bpp::EdSymbolList< T >inlinevirtual
getNumberOfListeners() constbpp::EdSymbolList< T >inlinevirtual
bpp::getStateValueAt(size_t siteIndex, int state) constbpp::CruxSymbolListinlinevirtual
bpp::EdCoreSymbolList::getStateValueAt(size_t siteIndex, int state) constbpp::EdCoreSymbolList< T >inlinevirtual
getValue(size_t pos) constbpp::SymbolList< T >inlinevirtual
listeners_bpp::EdSymbolList< T >protected
bpp::operator()(size_t siteIndex, int state) constbpp::CruxSymbolListinlinevirtual
bpp::EdCoreSymbolList::operator()(size_t siteIndex, int state) constbpp::EdCoreSymbolList< T >inlinevirtual
operator=(const CoreSymbolList< T > &list)bpp::EdSymbolList< T >inlineprotected
operator=(const EdSymbolList &list)bpp::EdSymbolList< T >inlineprotected
bpp::SymbolList::operator=(const SymbolList< T > &list)bpp::SymbolList< T >inline
operator[](size_t pos) constbpp::SymbolList< T >inlinevirtual
operator[](size_t pos)bpp::SymbolList< T >inlinevirtual
propagateEvents(bool yn)bpp::EdSymbolList< T >inlineprotectedvirtual
propagateEvents() constbpp::EdSymbolList< T >inlineprotectedvirtual
propagateEvents_bpp::EdSymbolList< T >private
removeCoreSymbolListListener(CoreSymbolListListener< T > *listener)bpp::EdSymbolList< T >inlinevirtual
setContent(const std::vector< T > &list)bpp::EdSymbolList< T >inlinevirtual
setElement(size_t pos, const T &v)bpp::EdSymbolList< T >inlinevirtual
shuffle()bpp::SymbolList< T >inlinevirtual
size() constbpp::SymbolList< T >inlinevirtual
SymbolList(const Alphabet *alpha)bpp::SymbolList< T >inline
SymbolList(const std::vector< T > &list, const Alphabet *alpha)bpp::SymbolList< T >inline
SymbolList(const SymbolList< T > &list)bpp::SymbolList< T >inline
SymbolList(const CoreSymbolList< T > &list)bpp::SymbolList< T >inline
toString() constbpp::SymbolList< T >inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~CoreSymbolList()bpp::CoreSymbolList< T >inlinevirtual
~CruxSymbolList()bpp::CruxSymbolListinlinevirtual
~EdCoreSymbolList()bpp::EdCoreSymbolList< T >inlinevirtual
~EdSymbolList()bpp::EdSymbolList< T >inlineprotectedvirtual
~SymbolList()bpp::SymbolList< T >inlinevirtual