bpp-seq3  3.0.0
bpp::EventDrivenIntSymbolList Member List

This is the complete list of members for bpp::EventDrivenIntSymbolList, including all inherited members.

AbstractTemplateEventDrivenSymbolList(std::shared_ptr< const Alphabet > alpha)bpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
AbstractTemplateEventDrivenSymbolList(const std::vector< int > &list, std::shared_ptr< const Alphabet > alpha)bpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
AbstractTemplateEventDrivenSymbolList(const TemplateCoreSymbolListInterface< int > &list)bpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
AbstractTemplateEventDrivenSymbolList(const AbstractTemplateEventDrivenSymbolList< int > &list)bpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
AbstractTemplateSymbolList(std::shared_ptr< const Alphabet > alpha)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList(const std::vector< int > &list, std::shared_ptr< const Alphabet > alpha)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList(const AbstractTemplateSymbolList< int > &list)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList(const TemplateCoreSymbolListInterface< int > &list)bpp::AbstractTemplateSymbolList< int >inline
addCoreSymbolListListener(std::shared_ptr< CoreSymbolListListener< int >> listener) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::addCoreSymbolListListener(std::shared_ptr< CoreSymbolListListener< T >> listener)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >pure virtual
addElement(const std::string &c) overridebpp::EventDrivenIntSymbolListvirtual
addElement(size_t pos, const std::string &c) overridebpp::EventDrivenIntSymbolListvirtual
bpp::IntSymbolList::addElement(const T &v) overridebpp::IntSymbolListinline
bpp::TemplateCoreSymbolListInterface::addElement(const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::TemplateCoreSymbolListInterface::addElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::AbstractTemplateSymbolList< int >::addElement(const int &v) overridebpp::AbstractTemplateSymbolList< int >inline
bpp::AbstractTemplateSymbolList< int >::addElement(size_t pos, const int &v) overridebpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateEventDrivenSymbolList< int >::addElement(const int &v) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
AbstractTemplateEventDrivenSymbolList< int >::addElement(size_t pos, const int &v) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
addIntSymbolListListener(std::shared_ptr< IntSymbolListListener > listener)bpp::EventDrivenIntSymbolListinline
afterSequenceChanged(const IntSymbolListEditionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::afterSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
afterSequenceDeleted(const IntSymbolListDeletionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::afterSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
afterSequenceInserted(const IntSymbolListInsertionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::afterSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
afterSequenceSubstituted(const IntSymbolListSubstitutionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::afterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
bpp::alphabet() const =0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::alphabet() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
alphabet_bpp::AbstractTemplateSymbolList< int >private
beforeSequenceChanged(const IntSymbolListEditionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::beforeSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
beforeSequenceDeleted(const IntSymbolListDeletionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::beforeSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
beforeSequenceInserted(const IntSymbolListInsertionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::beforeSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
beforeSequenceSubstituted(const IntSymbolListSubstitutionEvent &event) overridebpp::EventDrivenIntSymbolListinlineprotectedvirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::beforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
clone() const overridebpp::EventDrivenIntSymbolListinlinevirtual
content_bpp::AbstractTemplateSymbolList< int >protected
bpp::deleteElement(size_t pos)=0bpp::CruxSymbolListInterfacepure virtual
bpp::AbstractTemplateSymbolList< int >::deleteElement(size_t pos) overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
AbstractTemplateEventDrivenSymbolList< int >::deleteElement(size_t pos) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
bpp::deleteElements(size_t pos, size_t len)=0bpp::CruxSymbolListInterfacepure virtual
bpp::AbstractTemplateSymbolList< int >::deleteElements(size_t pos, size_t len) overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
AbstractTemplateEventDrivenSymbolList< int >::deleteElements(size_t pos, size_t len) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
EventDrivenIntSymbolList(std::shared_ptr< const Alphabet > alpha)bpp::EventDrivenIntSymbolListinline
EventDrivenIntSymbolList(const std::vector< std::string > &list, std::shared_ptr< const Alphabet > alpha)bpp::EventDrivenIntSymbolListinline
EventDrivenIntSymbolList(const std::vector< int > &list, std::shared_ptr< const Alphabet > alpha)bpp::EventDrivenIntSymbolListinline
EventDrivenIntSymbolList(const IntSymbolList &list)bpp::EventDrivenIntSymbolListinline
EventDrivenIntSymbolList(const EventDrivenIntSymbolList &list)bpp::EventDrivenIntSymbolListinline
fireAfterSequenceChanged(const CoreSymbolListEditionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireAfterSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireAfterSequenceDeleted(const CoreSymbolListDeletionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireAfterSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireAfterSequenceInserted(const CoreSymbolListInsertionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireAfterSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireAfterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireAfterSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireBeforeSequenceChanged(const CoreSymbolListEditionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireBeforeSequenceChanged(const CoreSymbolListEditionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireBeforeSequenceDeleted(const CoreSymbolListDeletionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireBeforeSequenceDeleted(const CoreSymbolListDeletionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireBeforeSequenceInserted(const CoreSymbolListInsertionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireBeforeSequenceInserted(const CoreSymbolListInsertionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
fireBeforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< int > &event) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::TemplateEventDrivenCoreSymbolListInterface::fireBeforeSequenceSubstituted(const CoreSymbolListSubstitutionEvent< T > &event)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >protectedpure virtual
bpp::getAlphabet() const =0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::getAlphabet() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
getChar(size_t pos) const overridebpp::EventDrivenIntSymbolListvirtual
bpp::getContent() const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::getContent() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
bpp::getElement(size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::getElement(size_t pos) const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
getListener(size_t i) const overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
getListener(size_t i) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
getNumberOfListeners() const overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
getStateValueAt(size_t siteIndex, int state) const overridebpp::IntSymbolListinlinevirtual
bpp::getValue(size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::getValue(size_t pos) const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
IntSymbolList(std::shared_ptr< const Alphabet > alpha)bpp::IntSymbolListinline
IntSymbolList(const std::vector< std::string > &list, std::shared_ptr< const Alphabet > alpha)bpp::IntSymbolListinline
IntSymbolList(const std::vector< int > &list, std::shared_ptr< const Alphabet > alpha)bpp::IntSymbolListinline
IntSymbolList(const IntSymbolList &list)bpp::IntSymbolListinline
IntSymbolListInterface()bpp::IntSymbolListInterfaceinline
listener(size_t i) const overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
listener(size_t i) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
listeners_bpp::AbstractTemplateEventDrivenSymbolList< int >protected
operator()(size_t siteIndex, int state) const overridebpp::IntSymbolListinlinevirtual
operator=(const IntSymbolList &list)bpp::EventDrivenIntSymbolListinline
operator=(const EventDrivenIntSymbolList &list)bpp::EventDrivenIntSymbolListinline
bpp::IntSymbolList::operator=(const IntSymbolListInterface &list)bpp::IntSymbolList
bpp::AbstractTemplateSymbolList< int >::operator=(const TemplateCoreSymbolListInterface< int > &list)bpp::AbstractTemplateSymbolList< int >inline
bpp::AbstractTemplateSymbolList< int >::operator=(const AbstractTemplateSymbolList< int > &list)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateEventDrivenSymbolList< int >::operator=(const TemplateCoreSymbolListInterface< int > &list)bpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
AbstractTemplateEventDrivenSymbolList< int >::operator=(const AbstractTemplateEventDrivenSymbolList &list)bpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotected
bpp::operator[](size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::operator[](size_t pos)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::operator[](size_t pos) const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
AbstractTemplateSymbolList< int >::operator[](size_t pos) overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
propagateEvents(bool yn) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotectedvirtual
propagateEvents() const overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlineprotectedvirtual
propagateEvents_bpp::AbstractTemplateEventDrivenSymbolList< int >private
removeCoreSymbolListListener(std::shared_ptr< CoreSymbolListListener< int >> listener) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
bpp::TemplateEventDrivenCoreSymbolListInterface::removeCoreSymbolListListener(std::shared_ptr< CoreSymbolListListener< T >> listener)=0bpp::TemplateEventDrivenCoreSymbolListInterface< T >pure virtual
setContent(const std::vector< std::string > &list) overridebpp::EventDrivenIntSymbolListvirtual
setContent(const std::vector< int > &list) overridebpp::EventDrivenIntSymbolListvirtual
bpp::IntSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::IntSymbolListInterface
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
setElement(size_t pos, const std::string &c) overridebpp::EventDrivenIntSymbolListvirtual
bpp::IntSymbolList::setElement(size_t pos, const T &v) overridebpp::IntSymbolListinline
bpp::TemplateCoreSymbolListInterface::setElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::AbstractTemplateSymbolList< int >::setElement(size_t pos, const int &v) overridebpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateEventDrivenSymbolList< int >::setElement(size_t pos, const int &v) overridebpp::AbstractTemplateEventDrivenSymbolList< int >inlinevirtual
bpp::shuffle()=0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::shuffle() overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
bpp::size() const =0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::size() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
SymbolType typedefbpp::IntSymbolListInterface
toString() const overridebpp::EventDrivenIntSymbolListvirtual
~AbstractTemplateEventDrivenSymbolList()=defaultbpp::AbstractTemplateEventDrivenSymbolList< int >protectedvirtual
~AbstractTemplateSymbolList()bpp::AbstractTemplateSymbolList< int >inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~CruxSymbolListInterface()bpp::CruxSymbolListInterfaceinlinevirtual
~EventDrivenIntSymbolList()bpp::EventDrivenIntSymbolListinlinevirtual
~IntSymbolList()bpp::IntSymbolListinlinevirtual
~IntSymbolListInterface()bpp::IntSymbolListInterfaceinlinevirtual
~TemplateCoreSymbolListInterface()bpp::TemplateCoreSymbolListInterface< T >inlinevirtual
~TemplateEventDrivenCoreSymbolListInterface()bpp::TemplateEventDrivenCoreSymbolListInterface< T >inlinevirtual