bpp-seq3  3.0.0
bpp::GeneticCode Member List

This is the complete list of members for bpp::GeneticCode, including all inherited members.

AbstractTransliterator()bpp::AbstractTransliteratorinline
areSynonymous(int i, int j) constbpp::GeneticCodeinline
areSynonymous(const std::string &i, const std::string &j) constbpp::GeneticCodeinline
clone() const override=0bpp::GeneticCodepure virtual
codonAlphabet() constbpp::GeneticCodeinlinevirtual
codonAlphabet_bpp::GeneticCodeprotected
GeneticCode(std::shared_ptr< const NucleicAlphabet > alphabet)bpp::GeneticCodeinline
getCodingSequence(const SequenceInterface &sequence, bool lookForInitCodon=false, bool includeInitCodon=false) constbpp::GeneticCode
getCodonAlphabet() constbpp::GeneticCodeinlinevirtual
getNumberOfStopCodons() const =0bpp::GeneticCodepure virtual
getProteicAlphabet() constbpp::GeneticCodeinlinevirtual
getSourceAlphabet() const overridebpp::GeneticCodeinlinevirtual
getStopCodonsAsChar() const =0bpp::GeneticCodepure virtual
getStopCodonsAsInt() const =0bpp::GeneticCodepure virtual
getSynonymous(int aminoacid) constbpp::GeneticCode
getSynonymous(const std::string &aminoacid) constbpp::GeneticCode
getTargetAlphabet() const overridebpp::GeneticCodeinlinevirtual
isAltStart(int state) const =0bpp::GeneticCodepure virtual
isAltStart(const std::string &state) const =0bpp::GeneticCodepure virtual
isFourFoldDegenerated(int codon) constbpp::GeneticCode
isStart(int state) constbpp::GeneticCodeinlinevirtual
isStart(const std::string &state) constbpp::GeneticCodeinlinevirtual
isStop(int state) const =0bpp::GeneticCodepure virtual
isStop(const std::string &state) const =0bpp::GeneticCodepure virtual
proteicAlphabet() constbpp::GeneticCodeinlinevirtual
proteicAlphabet_bpp::GeneticCodeprotected
sourceAlphabet() const overridebpp::GeneticCodeinlinevirtual
targetAlphabet() const overridebpp::GeneticCodeinlinevirtual
tlnTable_bpp::GeneticCodeprotected
translate(int state) const overridebpp::GeneticCodevirtual
translate(const std::string &state) const overridebpp::GeneticCodevirtual
translate(const SequenceInterface &sequence) const overridebpp::GeneticCodeinlinevirtual
TransliteratorInterface()bpp::TransliteratorInterfaceinline
~AbstractTransliterator()bpp::AbstractTransliteratorinlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~GeneticCode()bpp::GeneticCodeinlinevirtual
~TransliteratorInterface()bpp::TransliteratorInterfaceinlinevirtual