bpp-seq3  3.0.0
bpp::IntSymbolList Member List

This is the complete list of members for bpp::IntSymbolList, including all inherited members.

AbstractTemplateSymbolList(std::shared_ptr< const Alphabet > alpha)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList(const std::vector< int > &list, std::shared_ptr< const Alphabet > alpha)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList(const AbstractTemplateSymbolList< int > &list)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList(const TemplateCoreSymbolListInterface< int > &list)bpp::AbstractTemplateSymbolList< int >inline
addElement(const std::string &c) overridebpp::IntSymbolListinlinevirtual
addElement(size_t pos, const std::string &c) overridebpp::IntSymbolListinlinevirtual
addElement(const T &v) overridebpp::IntSymbolListinline
addElement(size_t pos, const T &v) overridebpp::IntSymbolListinline
bpp::TemplateCoreSymbolListInterface::addElement(const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::TemplateCoreSymbolListInterface::addElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::addElement(const int &v) overridebpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList< int >::addElement(size_t pos, const int &v) overridebpp::AbstractTemplateSymbolList< int >inline
bpp::alphabet() const =0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::alphabet() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
alphabet_bpp::AbstractTemplateSymbolList< int >private
clone() const overridebpp::IntSymbolListinlinevirtual
content_bpp::AbstractTemplateSymbolList< int >protected
bpp::deleteElement(size_t pos)=0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::deleteElement(size_t pos) overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
bpp::deleteElements(size_t pos, size_t len)=0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::deleteElements(size_t pos, size_t len) overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
bpp::getAlphabet() const =0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::getAlphabet() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
getChar(size_t pos) const overridebpp::IntSymbolListvirtual
bpp::getContent() const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::getContent() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
bpp::getElement(size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::getElement(size_t pos) const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
getStateValueAt(size_t siteIndex, int state) const overridebpp::IntSymbolListinlinevirtual
bpp::getValue(size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::getValue(size_t pos) const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
IntSymbolList(std::shared_ptr< const Alphabet > alpha)bpp::IntSymbolListinline
IntSymbolList(const std::vector< std::string > &list, std::shared_ptr< const Alphabet > alpha)bpp::IntSymbolListinline
IntSymbolList(const std::vector< int > &list, std::shared_ptr< const Alphabet > alpha)bpp::IntSymbolListinline
IntSymbolList(const IntSymbolList &list)bpp::IntSymbolListinline
IntSymbolListInterface()bpp::IntSymbolListInterfaceinline
operator()(size_t siteIndex, int state) const overridebpp::IntSymbolListinlinevirtual
operator=(const IntSymbolListInterface &list)bpp::IntSymbolList
operator=(const IntSymbolList &list)bpp::IntSymbolListinline
AbstractTemplateSymbolList< int >::operator=(const TemplateCoreSymbolListInterface< int > &list)bpp::AbstractTemplateSymbolList< int >inline
AbstractTemplateSymbolList< int >::operator=(const AbstractTemplateSymbolList< int > &list)bpp::AbstractTemplateSymbolList< int >inline
bpp::operator[](size_t pos) const =0bpp::TemplateCoreSymbolListInterface< T >pure virtual
bpp::operator[](size_t pos)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::operator[](size_t pos) const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
AbstractTemplateSymbolList< int >::operator[](size_t pos) overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
setContent(const std::vector< int > &list) overridebpp::IntSymbolListvirtual
setContent(const std::vector< std::string > &list) overridebpp::IntSymbolListvirtual
bpp::IntSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::IntSymbolListInterface
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
setElement(size_t pos, const std::string &c) overridebpp::IntSymbolListinlinevirtual
setElement(size_t pos, const T &v) overridebpp::IntSymbolListinline
bpp::TemplateCoreSymbolListInterface::setElement(size_t pos, const T &c)=0bpp::TemplateCoreSymbolListInterface< T >pure virtual
AbstractTemplateSymbolList< int >::setElement(size_t pos, const int &v) overridebpp::AbstractTemplateSymbolList< int >inline
bpp::shuffle()=0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::shuffle() overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
bpp::size() const =0bpp::CruxSymbolListInterfacepure virtual
AbstractTemplateSymbolList< int >::size() const overridebpp::AbstractTemplateSymbolList< int >inlinevirtual
SymbolType typedefbpp::IntSymbolListInterface
toString() const overridebpp::IntSymbolListinlinevirtual
~AbstractTemplateSymbolList()bpp::AbstractTemplateSymbolList< int >inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~CruxSymbolListInterface()bpp::CruxSymbolListInterfaceinlinevirtual
~IntSymbolList()bpp::IntSymbolListinlinevirtual
~IntSymbolListInterface()bpp::IntSymbolListInterfaceinlinevirtual
~TemplateCoreSymbolListInterface()bpp::TemplateCoreSymbolListInterface< T >inlinevirtual