bpp-seq3  3.0.0
bpp::SequenceContainer Member List

This is the complete list of members for bpp::SequenceContainer, including all inherited members.

addSequence(const Sequence &sequence, bool checkName)=0bpp::SequenceContainerpure virtual
clear()=0bpp::SequencedValuesContainerpure virtual
clone() const=0bpp::Clonablepure virtual
createEmptyContainer() const =0bpp::SequencedValuesContainerpure virtual
deleteGeneralComments()=0bpp::SequencedValuesContainerpure virtual
getAlphabet() const =0bpp::SequencedValuesContainerpure virtual
getComments(const std::string &name) const =0bpp::SequencedValuesContainerpure virtual
getGeneralComments() const =0bpp::SequencedValuesContainerpure virtual
getNumberOfSequences() const =0bpp::SequencedValuesContainerpure virtual
getSequence(const std::string &name) const =0bpp::SequenceContainerpure virtual
getSequenceNames() const =0bpp::SequencedValuesContainerpure virtual
getStateValueAt(size_t siteIndex, const std::string &sequenceName, int state) const =0bpp::SequencedValuesContainerpure virtual
hasSequence(const std::string &name) const =0bpp::SequencedValuesContainerpure virtual
operator()(const std::string &sequenceName, size_t elementIndex)=0bpp::SequenceContainerpure virtual
operator()(const std::string &sequenceName, size_t elementIndex) const =0bpp::SequenceContainerpure virtual
bpp::SequencedValuesContainer::operator()(size_t siteIndex, const std::string &sequenceName, int state) const =0bpp::SequencedValuesContainerpure virtual
removeSequence(const std::string &name)=0bpp::SequenceContainerpure virtual
SequenceContainer()bpp::SequenceContainerinline
setComments(const std::string &name, const Comments &comments)=0bpp::SequencedValuesContainerpure virtual
setGeneralComments(const Comments &comments)=0bpp::SequencedValuesContainerpure virtual
setSequence(const std::string &name, const Sequence &sequence, bool checkName)=0bpp::SequenceContainerpure virtual
setSequenceNames(const std::vector< std::string > &names, bool checkNames)=0bpp::SequencedValuesContainerpure virtual
toString(const std::string &name) const =0bpp::SequencedValuesContainerpure virtual
valueAt(const std::string &sequenceName, size_t elementIndex)=0bpp::SequenceContainerpure virtual
valueAt(const std::string &sequenceName, size_t elementIndex) const =0bpp::SequenceContainerpure virtual
~Clonable()=defaultbpp::Clonablevirtual
~SequenceContainer()bpp::SequenceContainerinlinevirtual