bpp::SequenceInterface Member List

This is the complete list of members for bpp::SequenceInterface, including all inherited members.

addElement(const std::string &c)=0	bpp::IntSymbolListInterface	pure virtual
addElement(size_t pos, const std::string &c)=0	bpp::IntSymbolListInterface	pure virtual
addElement(const T &c)=0	bpp::IntSymbolListInterface
addElement(size_t pos, const T &c)=0	bpp::IntSymbolListInterface
bpp::TemplateCoreSymbolListInterface::addElement(const T &c)=0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
bpp::TemplateCoreSymbolListInterface::addElement(size_t pos, const T &c)=0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
alphabet() const =0	bpp::CruxSymbolListInterface	pure virtual
append(const SequenceInterface &seq)=0	bpp::SequenceInterface	pure virtual
append(const std::vector< int > &content)=0	bpp::SequenceInterface	pure virtual
append(const std::vector< std::string > &content)=0	bpp::SequenceInterface	pure virtual
append(const std::string &content)=0	bpp::SequenceInterface	pure virtual
clearComments()=0	bpp::Commentable	pure virtual
clone() const override=0	bpp::SequenceInterface	pure virtual
Commentable()	bpp::Commentable	inline
CoreSequenceInterface()	bpp::CoreSequenceInterface	inline
deleteElement(size_t pos)=0	bpp::CruxSymbolListInterface	pure virtual
deleteElements(size_t pos, size_t len)=0	bpp::CruxSymbolListInterface	pure virtual
ElementType typedef	bpp::SequenceInterface
getAlphabet() const =0	bpp::CruxSymbolListInterface	pure virtual
getChar(size_t pos) const =0	bpp::IntSymbolListInterface	pure virtual
getComments() const =0	bpp::Commentable	pure virtual
getContent() const =0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
getElement(size_t pos) const =0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
getName() const =0	bpp::CoreSequenceInterface	pure virtual
getStateValueAt(size_t position, int state) const =0	bpp::CruxSymbolListInterface	pure virtual
getValue(size_t pos) const =0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
IntSymbolListInterface()	bpp::IntSymbolListInterface	inline
operator()(size_t position, int state) const =0	bpp::CruxSymbolListInterface	pure virtual
operator[](size_t pos) const =0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
operator[](size_t pos)=0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
setComments(const Comments &comments)=0	bpp::Commentable	pure virtual
setContent(const std::string &sequence)=0	bpp::SequenceInterface	pure virtual
setContent(const std::vector< std::string > &list) override=0	bpp::SequenceInterface	pure virtual
setContent(const std::vector< int > &list) override=0	bpp::SequenceInterface	pure virtual
bpp::IntSymbolListInterface::setContent(const std::vector< T > &list)=0	bpp::IntSymbolListInterface
bpp::TemplateCoreSymbolListInterface::setContent(const std::vector< T > &list)=0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
setElement(size_t pos, const std::string &c)=0	bpp::IntSymbolListInterface	pure virtual
setElement(size_t pos, const T &c)=0	bpp::IntSymbolListInterface
bpp::TemplateCoreSymbolListInterface::setElement(size_t pos, const T &c)=0	bpp::TemplateCoreSymbolListInterface< T >	pure virtual
setName(const std::string &name)=0	bpp::CoreSequenceInterface	pure virtual
setToSizeL(size_t newSize)=0	bpp::CoreSequenceInterface	pure virtual
setToSizeR(size_t newSize)=0	bpp::CoreSequenceInterface	pure virtual
shuffle()=0	bpp::CruxSymbolListInterface	pure virtual
size() const =0	bpp::CruxSymbolListInterface	pure virtual
SymbolType typedef	bpp::IntSymbolListInterface
toString() const =0	bpp::CruxSymbolListInterface	pure virtual
~Clonable()=default	bpp::Clonable	virtual
~Commentable()	bpp::Commentable	inlinevirtual
~CoreSequenceInterface()	bpp::CoreSequenceInterface	inlinevirtual
~CruxSymbolListInterface()	bpp::CruxSymbolListInterface	inlinevirtual
~IntSymbolListInterface()	bpp::IntSymbolListInterface	inlinevirtual
~SequenceInterface()	bpp::SequenceInterface	inlinevirtual
~TemplateCoreSymbolListInterface()	bpp::TemplateCoreSymbolListInterface< T >	inlinevirtual