bpp-seq3  3.0.0
bpp::SimpleScore Member List

This is the complete list of members for bpp::SimpleScore, including all inherited members.

alphabet() const overridebpp::SimpleScoreinlinevirtual
alphabet_bpp::SimpleScoreprivate
AlphabetIndex2()bpp::AlphabetIndex2inline
clone() const overridebpp::SimpleScoreinlinevirtual
distanceMatrix_bpp::SimpleScoreprivate
getAlphabet() const overridebpp::SimpleScoreinlinevirtual
getIndex(int state1, int state2) const overridebpp::SimpleScorevirtual
getIndex(const std::string &state1, const std::string &state2) const overridebpp::SimpleScorevirtual
getIndexMatrix() const overridebpp::SimpleScoreinlinevirtual
isSymmetric() const overridebpp::SimpleScoreinlinevirtual
operator=(const SimpleScore &sc)bpp::SimpleScoreinline
SimpleScore(const Alphabet *alphabet, double match, double mismatch)bpp::SimpleScore
SimpleScore(const SimpleScore &sc)bpp::SimpleScoreinline
~AlphabetIndex2()bpp::AlphabetIndex2inlinevirtual
~Clonable()=defaultbpp::Clonablevirtual
~SimpleScore()bpp::SimpleScoreinlinevirtual