Phylogenetic tree of the HOG000230897 gene family of HOGENOM database

UniprotKB : Q14678
Family Alignment Download SRS Archeopteryx
UniProtKB Accession numberSpecies
Display : UniprotKBSpeciesHOGENOMRaw
Bacteria
Eukarya
Archaea
Bacteroidetes
Planctomycetes
Chlamydiales
Spirochaetes
Betaproteobacteria
Gammaproteobacteria
Alphaproteobacteria
Deltaproteobacteria
Epsilonproteobacteria
Clostridia
Bacilli
Mycoplasma
Chloroflexi
Cyanobacteria
Thermus
Deinococcus
Actinobacteria
Aquificales
Thermotogales
Others
Note: Entries which are not found in UniprotKB are tagged with a # character.

  • TREE CALCULATED WITH PHYML -d aa -q -n 1 -b -4 -m JTT -v e -c 4 -a e -s BEST

  • GBLOCKS OPTIONS -b1=24 -b2=24 -b5=a Gblocks alignment: 1446 positions (94 %) in 5 selected block(s)

  • ALIGNMENT CALCULATED WITH CLUSTALOMEGA



If you use families from HOVERGEN, HOMOLENS or HOGENOM, Please cite :

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M and Perrière G (2009)
"Databases of homologous gene families for comparative genomics" BMC Bioinformatics, 10 (Suppl 6):S3

If you use families HOMOLENS,please cite as well Ensembl as specified here


Tree display perl modules by Li Heng.(Ruan et al. (2008)"TreeFam: 2008 Update." Nucleic Acid Res. 36 (Database issue):D735-40)
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