(data stored in SCRATCH zone)

SWISSPROT: A0A0E1NR78_YERPA

ID   A0A0E1NR78_YERPA        Unreviewed;       285 AA.
AC   A0A0E1NR78;
DT   27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT   27-MAY-2015, sequence version 1.
DT   05-DEC-2018, entry version 29.
DE   RecName: Full=RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961};
DE   AltName: Full=RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961};
GN   Name=rpoH {ECO:0000256|HAMAP-Rule:MF_00961};
GN   OrderedLocusNames=YPA_0211 {ECO:0000313|EMBL:ABG12180.1};
OS   Yersinia pestis bv. Antiqua (strain Antiqua).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Yersiniaceae; Yersinia.
OX   NCBI_TaxID=360102 {ECO:0000313|EMBL:ABG12180.1, ECO:0000313|Proteomes:UP000001971};
RN   [1] {ECO:0000313|EMBL:ABG12180.1, ECO:0000313|Proteomes:UP000001971}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Antiqua {ECO:0000313|EMBL:ABG12180.1,
RC   ECO:0000313|Proteomes:UP000001971};
RX   PubMed=16740952; DOI=10.1128/JB.00124-06;
RA   Chain P.S., Hu P., Malfatti S.A., Radnedge L., Larimer F.,
RA   Vergez L.M., Worsham P., Chu M.C., Andersen G.L.;
RT   "Complete genome sequence of Yersinia pestis strains Antiqua and
RT   Nepal516: evidence of gene reduction in an emerging pathogen.";
RL   J. Bacteriol. 188:4453-4463(2006).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. This sigma factor is involved in regulation of
CC       expression of heat shock genes. {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SUBUNIT: Interacts with the RNA polymerase core enzyme.
CC       {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961}.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. RpoH subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_00961}.
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DR   EMBL; CP000308; ABG12180.1; -; Genomic_DNA.
DR   RefSeq; WP_002211506.1; NZ_CP009906.1.
DR   EnsemblBacteria; ABG12180; ABG12180; YPA_0211.
DR   EnsemblBacteria; AJJ79415; AJJ79415; CH58_3056.
DR   KEGG; ypa:YPA_0211; -.
DR   PATRIC; fig|360102.15.peg.3208; -.
DR   KO; K03089; -.
DR   OMA; YQRWLAE; -.
DR   Proteomes; UP000001971; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0009408; P:response to heat; IEA:UniProtKB-UniRule.
DR   GO; GO:0001123; P:transcription initiation from bacterial-type RNA polymerase promoter; IEA:UniProtKB-UniRule.
DR   Gene3D; 1.10.10.10; -; 1.
DR   HAMAP; MF_00961; Sigma70_RpoH; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR012759; RNA_pol_sigma_RpoH_proteobac.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02392; rpoH_proteo; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
DR   PRODOM; A0A0E1NR78.
DR   SWISS-2DPAGE; A0A0E1NR78.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001971};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961};
KW   DNA-binding {ECO:0000256|HAMAP-Rule:MF_00961};
KW   Sigma factor {ECO:0000256|HAMAP-Rule:MF_00961};
KW   Stress response {ECO:0000256|HAMAP-Rule:MF_00961};
KW   Transcription {ECO:0000256|HAMAP-Rule:MF_00961};
KW   Transcription regulation {ECO:0000256|HAMAP-Rule:MF_00961}.
FT   DNA_BIND    254    273       H-T-H motif. {ECO:0000256|HAMAP-Rule:
FT                                MF_00961}.
FT   REGION       53    122       Sigma-70 factor domain-2.
FT                                {ECO:0000256|HAMAP-Rule:MF_00961}.
FT   REGION      229    281       Sigma-70 factor domain-4.
FT                                {ECO:0000256|HAMAP-Rule:MF_00961}.
FT   MOTIF        77     80       Interaction with polymerase core subunit
FT                                RpoC. {ECO:0000256|HAMAP-Rule:MF_00961}.
SQ   SEQUENCE   285 AA;  32700 MW;  9900EA12C0651B15 CRC64;
     MTKEMQTLAL VPQGSLEAYI RAANAYPMLT AEEERELAER LHYQGDLGAA KQLILSHLRF
     VAHVARNYSG YGLPQADLIQ EGNIGLMKAV RRFNPEVGVR LVSFAVHWIK AEIHEYVLRN
     WRIVKVATTK AQRKLFFNLR KTKQRLGWFN QDEVELVAKE LGVTSKDVRE MESRMSAQDM
     TFDPSPDDEA RDGQFMAPVL YLQDKTSDFA DGIEEDNWDS HAADKLSYAL EGLDERSQHI
     IRARWLDDEN KSTLQELADQ YGVSAERVRQ LEKNAMKKLR MAIEA
//

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