(data stored in SCRATCH zone)

SWISSPROT: A0A0F6BHV8_GEOS0

ID   A0A0F6BHV8_GEOS0        Unreviewed;       187 AA.
AC   A0A0F6BHV8;
DT   24-JUN-2015, integrated into UniProtKB/TrEMBL.
DT   24-JUN-2015, sequence version 1.
DT   11-DEC-2019, entry version 35.
DE   SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP73009.1};
GN   OrderedLocusNames=GY4MC1_0153 {ECO:0000313|EMBL:ADP73009.1};
OS   Geobacillus sp. (strain Y4.1MC1).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus;
OC   unclassified Geobacillus.
OX   NCBI_TaxID=581103 {ECO:0000313|EMBL:ADP73009.1};
RN   [1] {ECO:0000313|EMBL:ADP73009.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Y4.1MC1 {ECO:0000313|EMBL:ADP73009.1};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L.,
RA   Pitluck S., Chertkov O., Zhang X., Detter J.C., Han C., Tapia R., Land M.,
RA   Hauser L., Jeffries C., Kyrpides N., Ivanova N., Ovchinnikova G., Brumm P.,
RA   Mead D., Woyke T.;
RT   "Complete sequence of chromosome of Geobacillus sp. Y4.1MC1.";
RL   Submitted (OCT-2010) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|SAAS:SAAS01160068}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CP002293; ADP73009.1; -; Genomic_DNA.
DR   RefSeq; WP_003247641.1; NC_014650.1.
DR   EnsemblBacteria; ADP73009; ADP73009; GY4MC1_0153.
DR   GeneID; 29237199; -.
DR   KEGG; gmc:GY4MC1_0153; -.
DR   OMA; RYQRKVY; -.
DR   OrthoDB; 1914729at2; -.
DR   BioCyc; GSP581103:G1GOQ-192-MONOMER; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70-like.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014294; RNA_pol_sigma-W_bacilli.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   PANTHER; PTHR43133; PTHR43133; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   TIGRFAMs; TIGR02948; SigW_bacill; 1.
PE   3: Inferred from homology;
DR   PRODOM; A0A0F6BHV8.
DR   SWISS-2DPAGE; A0A0F6BHV8.
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN          24..89
FT                   /note="Sigma70_r2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          129..180
FT                   /note="Sigma70_r4_2"
FT                   /evidence="ECO:0000259|Pfam:PF08281"
SQ   SEQUENCE   187 AA;  21765 MW;  640021CF594E2167 CRC64;
     MEIFVKKRIK AIKKGDQNAY ADIVDLYKDK IYRLCYRMLG NRHEAEDTAQ EAFIRAYVNI
     HTYNPNMKFS SWLYRIATNL AIDKIRKKKP DAYLDEEISG TDGLTMYSQL SSSEASPEET
     LESLELQETV QKAIEKLPEK YRSVIVLRYI EDLSLQEISE ILDLPLGTVK TRIHRGREAL
     RKHLGHL
//

If you have problems or comments...

PBIL Back to PBIL home page