(data stored in SCRATCH zone)

SWISSPROT: A0LF02_SYNFM

ID   A0LF02_SYNFM            Unreviewed;       576 AA.
AC   A0LF02;
DT   12-DEC-2006, integrated into UniProtKB/TrEMBL.
DT   12-DEC-2006, sequence version 1.
DT   08-MAY-2019, entry version 87.
DE   SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ABK16004.1};
GN   OrderedLocusNames=Sfum_0303 {ECO:0000313|EMBL:ABK16004.1};
OS   Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).
OC   Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales;
OC   Syntrophobacteraceae; Syntrophobacter.
OX   NCBI_TaxID=335543 {ECO:0000313|EMBL:ABK16004.1, ECO:0000313|Proteomes:UP000001784};
RN   [1] {ECO:0000313|EMBL:ABK16004.1, ECO:0000313|Proteomes:UP000001784}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 10017 / MPOB {ECO:0000313|Proteomes:UP000001784};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Pitluck S., Goltsman E.G.,
RA   Martinez M., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA   Kim E., Boone D.R., Brockman F., Culley D., Ferry J., Gunsalus R.,
RA   McInerney M.J., Morrison M., Plugge C., Rohlin L., Scholten J.,
RA   Sieber J., Stams A.J.M., Worm P., Henstra A.M., Richardson P.;
RT   "Complete sequence of Syntrophobacter fumaroxidans MPOB.";
RL   Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CP000478; ABK16004.1; -; Genomic_DNA.
DR   STRING; 335543.Sfum_0303; -.
DR   EnsemblBacteria; ABK16004; ABK16004; Sfum_0303.
DR   KEGG; sfu:Sfum_0303; -.
DR   eggNOG; ENOG4108JUB; Bacteria.
DR   eggNOG; COG3829; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   OMA; LEAKYTF; -.
DR   BioCyc; SFUM335543:G1G7I-308-MONOMER; -.
DR   Proteomes; UP000001784; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd00130; PAS; 2.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR000700; PAS-assoc_C.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 2.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF55785; SSF55785; 2.
DR   TIGRFAMs; TIGR00229; sensory_box; 2.
DR   PROSITE; PS50113; PAC; 1.
DR   PROSITE; PS50112; PAS; 2.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
DR   PRODOM; A0LF02.
DR   SWISS-2DPAGE; A0LF02.
KW   ATP-binding {ECO:0000256|SAAS:SAAS00473007};
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001784};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00814512};
KW   Nucleotide-binding {ECO:0000256|SAAS:SAAS00473126};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001784};
KW   Transcription {ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN        6     57       PAS. {ECO:0000259|PROSITE:PS50112}.
FT   DOMAIN       67    120       PAC. {ECO:0000259|PROSITE:PS50113}.
FT   DOMAIN      124    180       PAS. {ECO:0000259|PROSITE:PS50112}.
FT   DOMAIN      258    488       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   COILED      232    252       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   576 AA;  63827 MW;  9AF6D9F367427403 CRC64;
     MEQQMEQSQI KAFLDAAHEG VLAVDADGRV TLFNTAAERL TGISADVVLG HHVRDVIPNT
     RLHIVLETGE AELDQIQDTG MTTVMTNRVP VRNARGEIVG AMAIFRDISE IKRLGCEIAE
     LKETRTLLEA IVNSTQDAIS VVDERGMGLL INPAYTRLTG MTEREVLHRP ATVDIAEGES
     MHLQVLRTRQ PVKHVPMKVG AARREVLVDV APIVVDGALK GSVAVIHDVS ELRSLTEQLD
     RAHRLIRRLD TKYTFEDIIA VSPIMQELLE QARKAAATPA TVLLSGESGT GKELFAHAIH
     HSSDRAQRPF ISVNCGAIPD TLQESQLFGY IEGAFTGAKR GGQKGHFLEA QGGTIFLDEI
     AESNLAVQTK LLRVLQEKEI VPVGASRPVP VDVRVITATN VDLASLVEKG HFRSDLFYRL
     HVLPIHIPPL RERREDIPPL LSVLLNKLNQ EYSRHVEGIS PEALEMFCSY HWPGNVRELE
     NMLGRALINM QPGEKTVRAE HLPHTLSAFA RPEARRDEGA EPLRVGRSLA EAHAVWEKAL
     LEKALAMTNA NRTQVARQLR ISVRQLYNKL KRYGLG
//

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