(data stored in SCRATCH zone)

SWISSPROT: A1SCQ0_NOCSJ

ID   A1SCQ0_NOCSJ            Unreviewed;       230 AA.
AC   A1SCQ0;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   08-MAY-2019, entry version 77.
DE   SubName: Full=Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABL79585.1};
GN   OrderedLocusNames=Noca_0035 {ECO:0000313|EMBL:ABL79585.1};
OS   Nocardioides sp. (strain ATCC BAA-499 / JS614).
OC   Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae;
OC   Nocardioides.
OX   NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL79585.1, ECO:0000313|Proteomes:UP000000640};
RN   [1] {ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R.,
RA   Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA   Mattes T., Gossett J., Richardson P.;
RT   "Complete sequence of chromosome 1 of Nocardioides sp. JS614.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABL79585.1, ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RX   PubMed=21551312; DOI=10.1128/JB.05109-11;
RA   Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C.,
RA   Copeland A., Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A.,
RA   Hammon N.M., Han S., Hauser L.J., Israni S., Kim E., Kyrpides N.,
RA   Land M.L., Lapidus A., Larimer F.W., Lucas S., Pitluck S.,
RA   Richardson P., Schmutz J., Tapia R., Thompson S., Tice H.N.,
RA   Spain J.C., Gossett J.G., Mattes T.E.;
RT   "Genome Sequence of the ethene- and vinyl chloride-oxidizing
RT   actinomycete Nocardioides sp. strain JS614.";
RL   J. Bacteriol. 193:3399-3400(2011).
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP000509; ABL79585.1; -; Genomic_DNA.
DR   RefSeq; WP_011753536.1; NC_008699.1.
DR   STRING; 196162.Noca_0035; -.
DR   EnsemblBacteria; ABL79585; ABL79585; Noca_0035.
DR   KEGG; nca:Noca_0035; -.
DR   eggNOG; ENOG4105G6M; Bacteria.
DR   eggNOG; COG1802; LUCA.
DR   HOGENOM; HOG000273990; -.
DR   OMA; ACSFDEH; -.
DR   OrthoDB; 1911275at2; -.
DR   BioCyc; NSP196162:GH4V-38-MONOMER; -.
DR   Proteomes; UP000000640; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   CDD; cd07377; WHTH_GntR; 1.
DR   Gene3D; 1.10.10.10; -; 1.
DR   Gene3D; 1.20.120.530; -; 1.
DR   InterPro; IPR011711; GntR_C.
DR   InterPro; IPR008920; TF_FadR/GntR_C.
DR   InterPro; IPR000524; Tscrpt_reg_HTH_GntR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   Pfam; PF07729; FCD; 1.
DR   Pfam; PF00392; GntR; 1.
DR   SMART; SM00895; FCD; 1.
DR   SMART; SM00345; HTH_GNTR; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   SUPFAM; SSF48008; SSF48008; 1.
DR   PROSITE; PS50949; HTH_GNTR; 1.
PE   4: Predicted;
DR   PRODOM; A1SCQ0.
DR   SWISS-2DPAGE; A1SCQ0.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000640};
KW   DNA-binding {ECO:0000256|SAAS:SAAS01113652};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000640};
KW   Transcription {ECO:0000256|SAAS:SAAS01113624};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS01113681}.
FT   DOMAIN       16     83       HTH gntR-type. {ECO:0000259|PROSITE:
FT                                PS50949}.
SQ   SEQUENCE   230 AA;  25870 MW;  8D2A6F67D82C31B8 CRC64;
     MTTPTEVHDD KLFHQPPLRE RVRVRLERMI IDGTFEPGAH LVETDLAQRL GVSRGPIREA
     LYQLQLQGWV DLRPRQGAFV HQPSVEEVDQ FFQVRALLES EISSLVAGHV TAADVDALRA
     MIEVANRHIA EGNVAALVAA NAEFHGYIHR LAGNPVLVDL VQMLDKRLRW YFSAVTMERA
     GDAWHEHAAL VDALAEGDRA RAVALTRSHN ERTRSAYLTH RRVLQAADED
//

If you have problems or comments...

PBIL Back to PBIL home page