(data stored in SCRATCH zone)

SWISSPROT: A1SDJ3_NOCSJ

ID   A1SDJ3_NOCSJ            Unreviewed;       300 AA.
AC   A1SDJ3;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   08-MAY-2019, entry version 86.
DE   SubName: Full=RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG {ECO:0000313|EMBL:ABL79878.1};
GN   OrderedLocusNames=Noca_0334 {ECO:0000313|EMBL:ABL79878.1};
OS   Nocardioides sp. (strain ATCC BAA-499 / JS614).
OC   Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae;
OC   Nocardioides.
OX   NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL79878.1, ECO:0000313|Proteomes:UP000000640};
RN   [1] {ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R.,
RA   Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA   Mattes T., Gossett J., Richardson P.;
RT   "Complete sequence of chromosome 1 of Nocardioides sp. JS614.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABL79878.1, ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RX   PubMed=21551312; DOI=10.1128/JB.05109-11;
RA   Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C.,
RA   Copeland A., Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A.,
RA   Hammon N.M., Han S., Hauser L.J., Israni S., Kim E., Kyrpides N.,
RA   Land M.L., Lapidus A., Larimer F.W., Lucas S., Pitluck S.,
RA   Richardson P., Schmutz J., Tapia R., Thompson S., Tice H.N.,
RA   Spain J.C., Gossett J.G., Mattes T.E.;
RT   "Genome Sequence of the ethene- and vinyl chloride-oxidizing
RT   actinomycete Nocardioides sp. strain JS614.";
RL   J. Bacteriol. 193:3399-3400(2011).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP000509; ABL79878.1; -; Genomic_DNA.
DR   RefSeq; WP_011753829.1; NC_008699.1.
DR   STRING; 196162.Noca_0334; -.
DR   EnsemblBacteria; ABL79878; ABL79878; Noca_0334.
DR   KEGG; nca:Noca_0334; -.
DR   eggNOG; ENOG4105DN4; Bacteria.
DR   eggNOG; COG1191; LUCA.
DR   HOGENOM; HOG000270271; -.
DR   KO; K02405; -.
DR   OrthoDB; 1857862at2; -.
DR   BioCyc; NSP196162:GH4V-339-MONOMER; -.
DR   Proteomes; UP000000640; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR012845; RNA_pol_sigma_FliA_WhiG.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88659; SSF88659; 2.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02479; FliA_WhiG; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; A1SDJ3.
DR   SWISS-2DPAGE; A1SDJ3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000640};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000640};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       34    103       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      112    166       Sigma70_r3. {ECO:0000259|Pfam:PF04539}.
FT   DOMAIN      197    244       Sigma70_r4. {ECO:0000259|Pfam:PF04545}.
SQ   SEQUENCE   300 AA;  32708 MW;  970671F92C9E4A34 CRC64;
     MTDPEVNEPD TPTAATSGPG PRPGSAEADR LAVEHVPLVT HVVYETLARV PSYVDRNDLR
     SAGLLALVAA ARSFDPERGV PFARYAMPRI RGAMVDELRS VDWASRSVRR RAREIEEARA
     RLAATLGEFP DDEAVAAALG MTLDEVNRVD SEAARGTVLP LDAGAQQGLA EILPVREAGP
     EERAVHLERV RYLADAVEEL PERMRLVVRG YFLEERPMAE LAAELGVTES RVSQVRAEAL
     ALLRDALGEA FDPHLPKPHP NPAGVAARRR LAYTSAVAAR YAARRTMPAR RPHRGLESTA
//

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