(data stored in SCRATCH zone)

SWISSPROT: A1SDL1_NOCSJ

ID   A1SDL1_NOCSJ            Unreviewed;       838 AA.
AC   A1SDL1;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   08-MAY-2019, entry version 88.
DE   SubName: Full=Assimilatory nitrite reductase (NAD(P)H) large subunit {ECO:0000313|EMBL:ABL79896.1};
DE            EC=1.7.1.4 {ECO:0000313|EMBL:ABL79896.1};
GN   OrderedLocusNames=Noca_0352 {ECO:0000313|EMBL:ABL79896.1};
OS   Nocardioides sp. (strain ATCC BAA-499 / JS614).
OC   Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae;
OC   Nocardioides.
OX   NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL79896.1, ECO:0000313|Proteomes:UP000000640};
RN   [1] {ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R.,
RA   Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA   Mattes T., Gossett J., Richardson P.;
RT   "Complete sequence of chromosome 1 of Nocardioides sp. JS614.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABL79896.1, ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RX   PubMed=21551312; DOI=10.1128/JB.05109-11;
RA   Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C.,
RA   Copeland A., Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A.,
RA   Hammon N.M., Han S., Hauser L.J., Israni S., Kim E., Kyrpides N.,
RA   Land M.L., Lapidus A., Larimer F.W., Lucas S., Pitluck S.,
RA   Richardson P., Schmutz J., Tapia R., Thompson S., Tice H.N.,
RA   Spain J.C., Gossett J.G., Mattes T.E.;
RT   "Genome Sequence of the ethene- and vinyl chloride-oxidizing
RT   actinomycete Nocardioides sp. strain JS614.";
RL   J. Bacteriol. 193:3399-3400(2011).
CC   -!- SIMILARITY: Belongs to the nitrite and sulfite reductase 4Fe-4S
CC       domain family. {ECO:0000256|SAAS:SAAS00570916}.
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DR   EMBL; CP000509; ABL79896.1; -; Genomic_DNA.
DR   RefSeq; WP_011753847.1; NC_008699.1.
DR   STRING; 196162.Noca_0352; -.
DR   EnsemblBacteria; ABL79896; ABL79896; Noca_0352.
DR   KEGG; nca:Noca_0352; -.
DR   eggNOG; ENOG4107QZF; Bacteria.
DR   eggNOG; COG1251; LUCA.
DR   HOGENOM; HOG000196164; -.
DR   KO; K00362; -.
DR   OMA; MYYIRTA; -.
DR   OrthoDB; 1128731at2; -.
DR   BioCyc; NSP196162:GH4V-357-MONOMER; -.
DR   Proteomes; UP000000640; Chromosome.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.
DR   GO; GO:0020037; F:heme binding; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0050661; F:NADP binding; IEA:InterPro.
DR   GO; GO:0008942; F:nitrite reductase [NAD(P)H] activity; IEA:UniProtKB-EC.
DR   GO; GO:0042128; P:nitrate assimilation; IEA:InterPro.
DR   Gene3D; 3.50.50.60; -; 2.
DR   InterPro; IPR036188; FAD/NAD-bd_sf.
DR   InterPro; IPR023753; FAD/NAD-binding_dom.
DR   InterPro; IPR005117; NiRdtase/SiRdtase_haem-b_fer.
DR   InterPro; IPR036136; Nit/Sulf_reduc_fer-like_dom_sf.
DR   InterPro; IPR012744; Nitri_red_NirB.
DR   InterPro; IPR017121; Nitrite_Rdtase_lsu.
DR   InterPro; IPR006067; NO2/SO3_Rdtase_4Fe4S_dom.
DR   InterPro; IPR006066; NO2/SO3_Rdtase_FeS/sirohaem_BS.
DR   InterPro; IPR041575; Rubredoxin_C.
DR   Pfam; PF01077; NIR_SIR; 1.
DR   Pfam; PF03460; NIR_SIR_ferr; 1.
DR   Pfam; PF07992; Pyr_redox_2; 1.
DR   Pfam; PF18267; Rubredoxin_C; 1.
DR   PIRSF; PIRSF037149; NirB; 1.
DR   PRINTS; PR00397; SIROHAEM.
DR   SUPFAM; SSF51905; SSF51905; 2.
DR   SUPFAM; SSF55124; SSF55124; 1.
DR   TIGRFAMs; TIGR02374; nitri_red_nirB; 1.
DR   PROSITE; PS00365; NIR_SIR; 1.
PE   3: Inferred from homology;
DR   PRODOM; A1SDL1.
DR   SWISS-2DPAGE; A1SDL1.
KW   4Fe-4S {ECO:0000256|SAAS:SAAS00296119};
KW   Complete proteome {ECO:0000313|Proteomes:UP000000640};
KW   Heme {ECO:0000256|SAAS:SAAS00460474};
KW   Iron {ECO:0000256|SAAS:SAAS00296139};
KW   Iron-sulfur {ECO:0000256|SAAS:SAAS00296144};
KW   Metal-binding {ECO:0000256|SAAS:SAAS00296121};
KW   Oxidoreductase {ECO:0000256|SAAS:SAAS00460503,
KW   ECO:0000313|EMBL:ABL79896.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000640}.
FT   DOMAIN       10    285       Pyr_redox_2. {ECO:0000259|Pfam:PF07992}.
FT   DOMAIN      320    388       Rubredoxin_C. {ECO:0000259|Pfam:PF18267}.
FT   DOMAIN      547    607       NIR_SIR_ferr. {ECO:0000259|Pfam:PF03460}.
FT   DOMAIN      619    755       NIR_SIR. {ECO:0000259|Pfam:PF01077}.
SQ   SEQUENCE   838 AA;  88999 MW;  8804B69B910A3115 CRC64;
     MSPKHRRTLL VAGHGMVGHR FVQAAIERGL TETHDIVVVG EERRPAYDRV ALTSFFEVGA
     DELSFLPSGE YDDPRVRLLL GTSVDGFDPA TRTVVLSDGQ EIAYDELVLA TGAMPFVPPV
     PGHDLEGCFV YRTIEDLEAI RAAAATAEVG AVVGGGLLGL EAANALAQLG LVTHVVEMAP
     RLMAVQVDEA GGATLARHIE RLGLTVHTGA TTQRILGADR VEGLALAGEE PIPADLVVFS
     AGIRPRDQLA RDAGLDVAER GGVLVDERCR TSDPHVWAIG ECAAPGGRMY GLVAPGYAMA
     EVVVDALLGG SGAFTGADLS TKLKLLGVDV ASFGDAFAAT EGALELVYAD AVTGVYKKLV
     LSADGRQLLG GILVGDASAY GVLRPMVASG IALPDNPEDL ILPTGRGVLE IGLPDEAQVC
     SCNDVTKGDI LAAAAAGTST RAGATCGSCK AQTKRIIEDY YASQGKVVDR SLCEHFALTR
     QELFDVVAVH GYTRFDDIVA GHGRGRGCDI CKPAIASILA SQLNGHVLDG PNRTLQDTND
     AYLANIQRNG TYSVVPRIPG GEITPEKLIV IGEVAQEFGL YTKITGGQRI DLFGARMEQL
     PAIWRRLVDS GFESGHAYGK SLRTVKSCVG STWCRYGVQD SVQLAIDLEL RYRGLRSPHK
     LKGGVSGCAR ECAEARAKDF GVIATEKGWN LYVGGNGGAT PAHARLLAGD LDRETLVRYL
     DRFLMYYVRT ADRLQRTASW IDSIDGGLDR VREIVVDDAL GLGSELEAAM ARHVAGYFDE
     WRATLDDPAK LARFVSFVNA PGTPDPHITF RSERDQAVPE ESSGPVDLGA TIPVGAPR
//

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