(data stored in SCRATCH zone)

SWISSPROT: A1SDT9_NOCSJ

ID   A1SDT9_NOCSJ            Unreviewed;       292 AA.
AC   A1SDT9;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   08-MAY-2019, entry version 84.
DE   SubName: Full=RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:ABL79974.1};
GN   OrderedLocusNames=Noca_0432 {ECO:0000313|EMBL:ABL79974.1};
OS   Nocardioides sp. (strain ATCC BAA-499 / JS614).
OC   Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae;
OC   Nocardioides.
OX   NCBI_TaxID=196162 {ECO:0000313|EMBL:ABL79974.1, ECO:0000313|Proteomes:UP000000640};
RN   [1] {ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H.,
RA   Pitluck S., Thompson L.S., Brettin T., Bruce D., Han C., Tapia R.,
RA   Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E.,
RA   Mattes T., Gossett J., Richardson P.;
RT   "Complete sequence of chromosome 1 of Nocardioides sp. JS614.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABL79974.1, ECO:0000313|Proteomes:UP000000640}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-499 / JS614 {ECO:0000313|Proteomes:UP000000640};
RX   PubMed=21551312; DOI=10.1128/JB.05109-11;
RA   Coleman N.V., Wilson N.L., Barry K., Brettin T.S., Bruce D.C.,
RA   Copeland A., Dalin E., Detter J.C., Del Rio T.G., Goodwin L.A.,
RA   Hammon N.M., Han S., Hauser L.J., Israni S., Kim E., Kyrpides N.,
RA   Land M.L., Lapidus A., Larimer F.W., Lucas S., Pitluck S.,
RA   Richardson P., Schmutz J., Tapia R., Thompson S., Tice H.N.,
RA   Spain J.C., Gossett J.G., Mattes T.E.;
RT   "Genome Sequence of the ethene- and vinyl chloride-oxidizing
RT   actinomycete Nocardioides sp. strain JS614.";
RL   J. Bacteriol. 193:3399-3400(2011).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC       {ECO:0000256|SAAS:SAAS00611284}.
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DR   EMBL; CP000509; ABL79974.1; -; Genomic_DNA.
DR   RefSeq; WP_011753925.1; NC_008699.1.
DR   STRING; 196162.Noca_0432; -.
DR   EnsemblBacteria; ABL79974; ABL79974; Noca_0432.
DR   KEGG; nca:Noca_0432; -.
DR   eggNOG; ENOG4105DGB; Bacteria.
DR   eggNOG; COG1595; LUCA.
DR   HOGENOM; HOG000220478; -.
DR   KO; K03088; -.
DR   OMA; VRIDDGM; -.
DR   OrthoDB; 1335404at2; -.
DR   BioCyc; NSP196162:GH4V-436-MONOMER; -.
DR   Proteomes; UP000000640; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR032710; NTF2-like_dom_sf.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR014303; RNA_pol_sigma-70_ECF.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF54427; SSF54427; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   TIGRFAMs; TIGR02957; SigX4; 1.
PE   3: Inferred from homology;
DR   PRODOM; A1SDT9.
DR   SWISS-2DPAGE; A1SDT9.
KW   Complete proteome {ECO:0000313|Proteomes:UP000000640};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000640};
KW   Sigma factor {ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       11     74       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      106    157       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   292 AA;  31937 MW;  5B2B29FE51B07B73 CRC64;
     MNATDSTDVF VDHRNLLFTV AYEMLGSAAD AEDVLQETWL RWVEVDREEV REARAYLVRI
     ATRLALNRMR TNARRRESYV GPWLPEPLLT TPDVAEDVEL ADSVSLAMLT LLETLGPTER
     AVFVLREVFD FGYDEIAAAV DKTPAAVRQI AHRARGHVAE RRPRAEATRS EREHVMATFL
     AAVATGDIQS LMDVLAPDVV LVTDGGGVKK AALRPILGRD KVVRFLGAVS EGLDAVADVV
     VVNGAPALRI VLDGELDTVA SMVVEDGLVT GLYVVRNPAK LARLDAVVTL TR
//

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