(data stored in SCRATCH zone)

SWISSPROT: A1VJB0_POLNA

ID   A1VJB0_POLNA            Unreviewed;       689 AA.
AC   A1VJB0;
DT   06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT   06-FEB-2007, sequence version 1.
DT   11-DEC-2019, entry version 75.
DE   SubName: Full=Recombinase {ECO:0000313|EMBL:ABM35738.1};
GN   OrderedLocusNames=Pnap_0415 {ECO:0000313|EMBL:ABM35738.1}, Pnap_4640
GN   {ECO:0000313|EMBL:ABM40057.1}, Pnap_4704
GN   {ECO:0000313|EMBL:ABM40116.1};
OS   Polaromonas naphthalenivorans (strain CJ2).
OG   Plasmid pPNAP04 {ECO:0000313|EMBL:ABM40057.1,
OG   ECO:0000313|Proteomes:UP000000644}.
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Polaromonas.
OX   NCBI_TaxID=365044 {ECO:0000313|EMBL:ABM35738.1, ECO:0000313|Proteomes:UP000000644};
RN   [1] {ECO:0000313|EMBL:ABM35738.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CJ2 {ECO:0000313|EMBL:ABM35738.1};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA   Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L.,
RA   Richardson P.;
RT   "Complete sequence of Chromosome1 of Polaromonas naphthalenivorans CJ2.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:ABM40057.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   PLASMID=CJ2 {ECO:0000313|EMBL:ABM40057.1}, and pPNAP04
RC   {ECO:0000313|EMBL:ABM40057.1};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA   Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA   Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Madsen E.L.,
RA   Richardson P.;
RT   "Complete sequence of plasmid pPNAP04 of Polaromonas naphthalenivorans
RT   CJ2.";
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Proteomes:UP000000644}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CJ2 {ECO:0000313|Proteomes:UP000000644};
RC   PLASMID=Plasmid pPNAP04 {ECO:0000313|Proteomes:UP000000644};
RX   PubMed=19453698; DOI=10.1111/j.1462-2920.2009.01947.x;
RA   Yagi J.M., Sims D., Brettin T., Bruce D., Madsen E.L.;
RT   "The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal
RT   tar-contaminated sediment, reveals physiological and metabolic versatility
RT   and evolution through extensive horizontal gene transfer.";
RL   Environ. Microbiol. 11:2253-2270(2009).
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DR   EMBL; CP000529; ABM35738.1; -; Genomic_DNA.
DR   EMBL; CP000533; ABM40057.1; -; Genomic_DNA.
DR   EMBL; CP000533; ABM40116.1; -; Genomic_DNA.
DR   RefSeq; WP_011798428.1; NC_008781.1.
DR   STRING; 365044.Pnap_0415; -.
DR   EnsemblBacteria; ABM35738; ABM35738; Pnap_0415.
DR   EnsemblBacteria; ABM40057; ABM40057; Pnap_4640.
DR   EnsemblBacteria; ABM40116; ABM40116; Pnap_4704.
DR   KEGG; pna:Pnap_0415; -.
DR   KEGG; pna:Pnap_4640; -.
DR   KEGG; pna:Pnap_4704; -.
DR   eggNOG; ENOG4105VU5; Bacteria.
DR   eggNOG; COG1961; LUCA.
DR   HOGENOM; HOG000228685; -.
DR   OMA; VNDIHAY; -.
DR   OrthoDB; 1791095at2; -.
DR   BioCyc; PNAP365044:GJ8X-419-MONOMER; -.
DR   Proteomes; UP000000644; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0000150; F:recombinase activity; IEA:InterPro.
DR   Gene3D; 1.10.10.2600; -; 1.
DR   Gene3D; 3.40.50.1390; -; 1.
DR   InterPro; IPR038109; DNA_bind_recomb_sf.
DR   InterPro; IPR011109; DNA_bind_recombinase_dom.
DR   InterPro; IPR006119; Resolv_N.
DR   InterPro; IPR036162; Resolvase-like_N_sf.
DR   Pfam; PF07508; Recombinase; 1.
DR   Pfam; PF00239; Resolvase; 1.
DR   SMART; SM00857; Resolvase; 1.
DR   SUPFAM; SSF53041; SSF53041; 1.
DR   PROSITE; PS51737; RECOMBINASE_DNA_BIND; 1.
DR   PROSITE; PS51736; RECOMBINASES_3; 1.
PE   4: Predicted;
DR   PRODOM; A1VJB0.
DR   SWISS-2DPAGE; A1VJB0.
KW   Plasmid {ECO:0000313|EMBL:ABM40057.1};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000644}.
FT   DOMAIN          15..164
FT                   /note="Resolvase/invertase-type recombinase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS51736"
FT   DOMAIN          171..315
FT                   /note="Recombinase"
FT                   /evidence="ECO:0000259|PROSITE:PS51737"
SQ   SEQUENCE   689 AA;  77714 MW;  67289BBE6440DF7C CRC64;
     MTTSDLLPAA VLRRKAVVYV RQSTQSQVQT NLESQRRQYD LVAQARRLGF AQVEVIDDDL
     GRSASGMVDR PGFERLVAWL CAGEVGAVLC FDASRLARNG RDWHHLLELC GLVEARVIDP
     DGVYDPCRPN DRLLLGMKGS ISEFELGVIR ARMFEAARAK AHRGELRISV PIGYVWHRQI
     GLGLDPDMRL QETIRLIFAR FRTLGSARQV MLSLAADDVH FPRPSDGKKM VSFDWTPIRY
     RNVISILKNP FYAGVYAYGK SEKRTTLVQG RLRKTYKHGK PLDRWDVMIK DHHEAYIDWA
     EFERNQKQLA VNAYGKVDGT KSGRGGRALL AGMLCCGRCG RRLTVAYTGR GVPQPVYRCD
     RPNLQLAQPR CFTFGARRPD EAIARELLRA VEPLAVEAAL QAERRYMQVQ ADQRRIVELE
     LQQARYEAGL AERRYAACDP DHRLIAAQLE KSWEAALQRV LACEQRLNVA RQVQSSARPD
     LTGLEEDLAA AWDAPGVTMR ARQQLLRTLV KDIVADVDDQ AREVVLTIHW RGGQHSQVRV
     VKPRTGEHGC RTPDEALAVM RSMAGKWSDE HIAATLNRMG LPTGQAKTWT AHRVSSVRRV
     NDIHAYRSAE KDGQWLTMSE AAAKLGVNNH RIRRLIKEGL LPAEQVVPRA PYQIRASDLL
     EQRVIDAIAR TLSPCRAVSE KQMSMFSST
//

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