(data stored in SCRATCH zone)

SWISSPROT: A4ATD1_MARSH

ID   A4ATD1_MARSH            Unreviewed;       187 AA.
AC   A4ATD1;
DT   03-APR-2007, integrated into UniProtKB/TrEMBL.
DT   03-APR-2007, sequence version 1.
DT   08-MAY-2019, entry version 72.
DE   RecName: Full=RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716};
GN   OrderedLocusNames=FB2170_16491 {ECO:0000313|EMBL:EAR00701.1};
OS   Maribacter sp. (strain HTCC2170 / KCCM 42371).
OC   Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae; Maribacter.
OX   NCBI_TaxID=313603 {ECO:0000313|EMBL:EAR00701.1, ECO:0000313|Proteomes:UP000001602};
RN   [1] {ECO:0000313|EMBL:EAR00701.1, ECO:0000313|Proteomes:UP000001602}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HTCC2170 / KCCM 42371 {ECO:0000313|Proteomes:UP000001602};
RX   PubMed=21037013; DOI=10.1128/JB.01207-10;
RA   Oh H.M., Kang I., Yang S.J., Jang Y., Vergin K.L., Giovannoni S.J.,
RA   Cho J.C.;
RT   "Complete genome sequence of strain HTCC2170, a novel member of the
RT   genus Maribacter in the family Flavobacteriaceae.";
RL   J. Bacteriol. 193:303-304(2011).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|RuleBase:RU000716, ECO:0000256|SAAS:SAAS01160068}.
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DR   EMBL; CP002157; EAR00701.1; -; Genomic_DNA.
DR   RefSeq; WP_013304504.1; NC_014472.1.
DR   STRING; 313603.FB2170_16491; -.
DR   EnsemblBacteria; EAR00701; EAR00701; FB2170_16491.
DR   KEGG; fbc:FB2170_16491; -.
DR   eggNOG; ENOG4105K6V; Bacteria.
DR   eggNOG; COG1595; LUCA.
DR   HOGENOM; HOG000094755; -.
DR   KO; K03088; -.
DR   OMA; TVWQKAH; -.
DR   OrthoDB; 1992113at2; -.
DR   BioCyc; MSP313603:G1GNS-76-MONOMER; -.
DR   Proteomes; UP000001602; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000838; RNA_pol_sigma70_ECF_CS.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   PANTHER; PTHR43133; PTHR43133; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS01063; SIGMA70_ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; A4ATD1.
DR   SWISS-2DPAGE; A4ATD1.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001602};
KW   DNA-binding {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001602};
KW   Sigma factor {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       24     89       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      128    172       Sigma70_r4. {ECO:0000259|Pfam:PF04545}.
FT   COILED      117    137       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   187 AA;  21620 MW;  237E4E058FE1CB41 CRC64;
     MSTLLEKHIV ELLQERNEKA ISLLYEHYGD TLYGVAKKVV RDEELAQDVL QESFVKIWKK
     SDSYDATKAK LFTWLFRITR NAAIDKLRSV NTKSDKEIQM DVSDVYNLGV DSIKPELMDV
     RENLDKIENK YQIVLEALFF QGMTQQEASD ELDIPLGTIK SRLKIGLREL KKIYGSTMLL
     TVLLNLM
//

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