(data stored in SCRATCH zone)

SWISSPROT: A4AVB7_MARSH

ID   A4AVB7_MARSH            Unreviewed;       180 AA.
AC   A4AVB7;
DT   03-APR-2007, integrated into UniProtKB/TrEMBL.
DT   03-APR-2007, sequence version 1.
DT   08-MAY-2019, entry version 69.
DE   RecName: Full=RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716};
GN   OrderedLocusNames=FB2170_00695 {ECO:0000313|EMBL:EAR00139.1};
OS   Maribacter sp. (strain HTCC2170 / KCCM 42371).
OC   Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae; Maribacter.
OX   NCBI_TaxID=313603 {ECO:0000313|EMBL:EAR00139.1, ECO:0000313|Proteomes:UP000001602};
RN   [1] {ECO:0000313|EMBL:EAR00139.1, ECO:0000313|Proteomes:UP000001602}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HTCC2170 / KCCM 42371 {ECO:0000313|Proteomes:UP000001602};
RX   PubMed=21037013; DOI=10.1128/JB.01207-10;
RA   Oh H.M., Kang I., Yang S.J., Jang Y., Vergin K.L., Giovannoni S.J.,
RA   Cho J.C.;
RT   "Complete genome sequence of strain HTCC2170, a novel member of the
RT   genus Maribacter in the family Flavobacteriaceae.";
RL   J. Bacteriol. 193:303-304(2011).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|RuleBase:RU000716, ECO:0000256|SAAS:SAAS01160068}.
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DR   EMBL; CP002157; EAR00139.1; -; Genomic_DNA.
DR   RefSeq; WP_013304834.1; NC_014472.1.
DR   STRING; 313603.FB2170_00695; -.
DR   EnsemblBacteria; EAR00139; EAR00139; FB2170_00695.
DR   KEGG; fbc:FB2170_00695; -.
DR   eggNOG; ENOG4107XI8; Bacteria.
DR   eggNOG; COG1595; LUCA.
DR   HOGENOM; HOG000094755; -.
DR   KO; K03088; -.
DR   OMA; IKSWFYK; -.
DR   OrthoDB; 1914729at2; -.
DR   BioCyc; MSP313603:G1GNS-405-MONOMER; -.
DR   Proteomes; UP000001602; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000838; RNA_pol_sigma70_ECF_CS.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   PANTHER; PTHR43133; PTHR43133; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88659; SSF88659; 1.
DR   SUPFAM; SSF88946; SSF88946; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS01063; SIGMA70_ECF; 1.
PE   3: Inferred from homology;
DR   PRODOM; A4AVB7.
DR   SWISS-2DPAGE; A4AVB7.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001602};
KW   DNA-binding {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611263};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001602};
KW   Sigma factor {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611278};
KW   Transcription {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611290};
KW   Transcription regulation {ECO:0000256|RuleBase:RU000716,
KW   ECO:0000256|SAAS:SAAS00611294}.
FT   DOMAIN       21     87       Sigma70_r2. {ECO:0000259|Pfam:PF04542}.
FT   DOMAIN      116    165       Sigma70_r4_2. {ECO:0000259|Pfam:PF08281}.
SQ   SEQUENCE   180 AA;  21161 MW;  5B4C187C1720F28D CRC64;
     MFQINVVEQC KANDRMAQMQ LYKQYCEGMF YVAMRYVQNS NDAEDVVQES FIKAFQRIHQ
     FKGEVTFGAW LKRIVINKSI DFLKARKQRL VELDENYLQL TDDEDWTVEN DISIDQVKLA
     IGQLPDKYKY VVMMFLIEGF DHREISEVLG LTETTSRTRL LRGKSYLKEL LKEKAYGTGS
//

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