(data stored in SCRATCH zone)

SWISSPROT: A4AVE3_MARSH

ID   A4AVE3_MARSH            Unreviewed;       154 AA.
AC   A4AVE3;
DT   03-APR-2007, integrated into UniProtKB/TrEMBL.
DT   03-APR-2007, sequence version 1.
DT   08-MAY-2019, entry version 72.
DE   RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00309628};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};
GN   OrderedLocusNames=FB2170_00825 {ECO:0000313|EMBL:EAR00165.1};
OS   Maribacter sp. (strain HTCC2170 / KCCM 42371).
OC   Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae; Maribacter.
OX   NCBI_TaxID=313603 {ECO:0000313|EMBL:EAR00165.1, ECO:0000313|Proteomes:UP000001602};
RN   [1] {ECO:0000313|EMBL:EAR00165.1, ECO:0000313|Proteomes:UP000001602}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HTCC2170 / KCCM 42371 {ECO:0000313|Proteomes:UP000001602};
RX   PubMed=21037013; DOI=10.1128/JB.01207-10;
RA   Oh H.M., Kang I., Yang S.J., Jang Y., Vergin K.L., Giovannoni S.J.,
RA   Cho J.C.;
RT   "Complete genome sequence of strain HTCC2170, a novel member of the
RT   genus Maribacter in the family Flavobacteriaceae.";
RL   J. Bacteriol. 193:303-304(2011).
CC   -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end
CC       of pre-16S rRNA. {ECO:0000256|HAMAP-Rule:MF_00651,
CC       ECO:0000256|SAAS:SAAS00309629}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651,
CC       ECO:0000256|SAAS:SAAS00086489}.
CC   -!- SIMILARITY: Belongs to the YqgF HJR family. {ECO:0000256|HAMAP-
CC       Rule:MF_00651}.
CC   -!- SIMILARITY: Belongs to the YqgF nuclease family.
CC       {ECO:0000256|SAAS:SAAS00570550}.
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DR   EMBL; CP002157; EAR00165.1; -; Genomic_DNA.
DR   STRING; 313603.FB2170_00825; -.
DR   EnsemblBacteria; EAR00165; EAR00165; FB2170_00825.
DR   KEGG; fbc:FB2170_00825; -.
DR   eggNOG; ENOG4107ZNS; Bacteria.
DR   eggNOG; COG0816; LUCA.
DR   HOGENOM; HOG000016953; -.
DR   KO; K07447; -.
DR   OMA; VKWDERF; -.
DR   Proteomes; UP000001602; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.420.140; -; 1.
DR   HAMAP; MF_00651; Nuclease_YqgF; 1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR005227; YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR33317; PTHR33317; 1.
DR   Pfam; PF03652; RuvX; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1.
PE   3: Inferred from homology;
DR   PRODOM; A4AVE3.
DR   SWISS-2DPAGE; A4AVE3.
KW   Complete proteome {ECO:0000313|Proteomes:UP000001602};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00459958};
KW   Hydrolase {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00086516};
KW   Nuclease {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00459935};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001602};
KW   Ribosome biogenesis {ECO:0000256|HAMAP-Rule:MF_00651,
KW   ECO:0000256|SAAS:SAAS00309597}.
FT   DOMAIN       20    118       YqgFc. {ECO:0000259|SMART:SM00732}.
SQ   SEQUENCE   154 AA;  17745 MW;  BC6916DC087589CC CRC64;
     MCFYSYNNLW FIFAKKLKLG RIVALDYGKV RTGIAVTDEL QLIASGLTTV KTVELISFLK
     KYVSEENVEK FVVGEPRQMD YTPSQAEELI KPFLKHLGRT FIEIPIERQD ERFTSKMAFQ
     SMIDGGIKKK QRKNKALVDE ISATLILQAY LNKK
//

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