(data stored in SCRATCH zone)

SWISSPROT: A4AVI4_MARSH

ID   A4AVI4_MARSH            Unreviewed;       304 AA.
AC   A4AVI4;
DT   03-APR-2007, integrated into UniProtKB/TrEMBL.
DT   03-APR-2007, sequence version 1.
DT   08-MAY-2019, entry version 68.
DE   RecName: Full=Transcription antitermination protein NusB {ECO:0000256|SAAS:SAAS01079076};
GN   OrderedLocusNames=FB2170_01030 {ECO:0000313|EMBL:EAR00206.1};
OS   Maribacter sp. (strain HTCC2170 / KCCM 42371).
OC   Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae; Maribacter.
OX   NCBI_TaxID=313603 {ECO:0000313|EMBL:EAR00206.1, ECO:0000313|Proteomes:UP000001602};
RN   [1] {ECO:0000313|EMBL:EAR00206.1, ECO:0000313|Proteomes:UP000001602}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=HTCC2170 / KCCM 42371 {ECO:0000313|Proteomes:UP000001602};
RX   PubMed=21037013; DOI=10.1128/JB.01207-10;
RA   Oh H.M., Kang I., Yang S.J., Jang Y., Vergin K.L., Giovannoni S.J.,
RA   Cho J.C.;
RT   "Complete genome sequence of strain HTCC2170, a novel member of the
RT   genus Maribacter in the family Flavobacteriaceae.";
RL   J. Bacteriol. 193:303-304(2011).
CC   -!- FUNCTION: Involved in transcription antitermination. Required for
CC       transcription of ribosomal RNA (rRNA) genes. Binds specifically to
CC       the boxA antiterminator sequence of the ribosomal RNA (rrn)
CC       operons. {ECO:0000256|SAAS:SAAS01079004}.
CC   -!- SIMILARITY: Belongs to the NusB family.
CC       {ECO:0000256|SAAS:SAAS00558782}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CP002157; EAR00206.1; -; Genomic_DNA.
DR   STRING; 313603.FB2170_01030; -.
DR   EnsemblBacteria; EAR00206; EAR00206; FB2170_01030.
DR   KEGG; fbc:FB2170_01030; -.
DR   eggNOG; ENOG4107R6T; Bacteria.
DR   eggNOG; COG0781; LUCA.
DR   HOGENOM; HOG000032402; -.
DR   KO; K03625; -.
DR   OMA; FPSIPVK; -.
DR   BioCyc; MSP313603:G1GNS-472-MONOMER; -.
DR   Proteomes; UP000001602; Chromosome.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006353; P:DNA-templated transcription, termination; IEA:InterPro.
DR   GO; GO:0031564; P:transcription antitermination; IEA:UniProtKB-KW.
DR   Gene3D; 1.10.940.10; -; 1.
DR   InterPro; IPR035926; NusB-like_sf.
DR   InterPro; IPR011605; NusB_fam.
DR   InterPro; IPR006027; NusB_RsmB_TIM44.
DR   PANTHER; PTHR11078; PTHR11078; 1.
DR   Pfam; PF01029; NusB; 1.
DR   SUPFAM; SSF48013; SSF48013; 1.
DR   TIGRFAMs; TIGR01951; nusB; 1.
PE   3: Inferred from homology;
DR   PRODOM; A4AVI4.
DR   SWISS-2DPAGE; A4AVI4.
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000001602};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001602};
KW   RNA-binding {ECO:0000256|SAAS:SAAS01090267};
KW   Transcription {ECO:0000256|SAAS:SAAS00057059};
KW   Transcription antitermination {ECO:0000256|SAAS:SAAS01078996};
KW   Transcription regulation {ECO:0000256|SAAS:SAAS00444733}.
FT   DOMAIN      195    288       NusB. {ECO:0000259|Pfam:PF01029}.
FT   COILED       74     94       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   304 AA;  35606 MW;  024BE527C6826B23 CRC64;
     MQCIYALTQS KDESLEKQEK FLKVSIENMY TLYLLMLSLL IEIQQLASNK VELSSKKYLS
     NSSDSFPDKR KFAKNRLLAK LSDNESLKSE LEKRKLKNWY LNEEYVKLIY KEIVESDVYA
     KYMIIPSSTF KDDKEFISTI FKEVIAPNEK IYDYFEDDKL TWVDDIPIVN TFILKQLKKV
     SEDKSDSYFL PRLLKDNEDM DFAQKLLTKT LLNNSKWEKE IEGKTPNWDK DRIADIDAIL
     LKMAICELLN FPSIPEKVTI NEFLEIAKEY STPKSSIFIN GILDKLVKEY KTEGKLKKVG
     RGLL
//

If you have problems or comments...

PBIL Back to PBIL home page